RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 PARPBPQ9NWS1 579 aa16.48■□□□□ 0.23
PNKP-213ENST00000599543 GMPR2Q9P2T1 348 aaKnown RBP16.48■□□□□ 0.23
PNKP-213ENST00000599543 ATRQ13535 2644 aa16.48■□□□□ 0.23
PNKP-213ENST00000599543 A0A1W2PR80 420 aa16.47■□□□□ 0.23
PNKP-213ENST00000599543 BBIP1A8MTZ0 92 aa16.47■□□□□ 0.23
PNKP-213ENST00000599543 CD8AP01732 235 aa16.47■□□□□ 0.23
PNKP-213ENST00000599543 IMPDH2P12268 514 aa16.47■□□□□ 0.23
PNKP-213ENST00000599543 PTAFRP25105 342 aa16.47■□□□□ 0.23
PNKP-213ENST00000599543 NTF4P34130 210 aa16.47■□□□□ 0.23
PNKP-213ENST00000599543 CDK6Q00534 326 aa16.47■□□□□ 0.23
PNKP-213ENST00000599543 DMTNQ08495 405 aa16.47■□□□□ 0.23
PNKP-213ENST00000599543 EPS8Q12929 822 aa16.47■□□□□ 0.23
PNKP-213ENST00000599543 LIN52Q52LA3 116 aa16.47■□□□□ 0.23
PNKP-213ENST00000599543 ZNF836Q6ZNA1 936 aa16.47■□□□□ 0.23
PNKP-213ENST00000599543 PTOV1Q86YD1 416 aa16.47■□□□□ 0.23
PNKP-213ENST00000599543 OR52E4Q8NGH9 312 aa16.47■□□□□ 0.23
PNKP-213ENST00000599543 OR10A6Q8NH74 314 aa16.47■□□□□ 0.23
PNKP-213ENST00000599543 RSPO3Q9BXY4 272 aaPredicted RBP16.47■□□□□ 0.23
PNKP-213ENST00000599543 REG4Q9BYZ8 158 aa16.47■□□□□ 0.23
PNKP-213ENST00000599543 UPB1Q9UBR1 384 aa16.47■□□□□ 0.23
PNKP-213ENST00000599543 ADAM21Q9UKJ8 722 aa16.47■□□□□ 0.23
PNKP-213ENST00000599543 ZNF443Q9Y2A4 671 aaPredicted RBP16.47■□□□□ 0.23
PNKP-213ENST00000599543 ARL2BPQ9Y2Y0 163 aa16.47■□□□□ 0.23
PNKP-213ENST00000599543 FLVCR1Q9Y5Y0 555 aa16.47■□□□□ 0.23
PNKP-213ENST00000599543 SLC25A15Q9Y619 301 aa16.47■□□□□ 0.23
PNKP-213ENST00000599543 DSPPQ9NZW4 1301 aa16.46■□□□□ 0.23
PNKP-213ENST00000599543 ZC3H12DA2A288 527 aaKnown RBP16.46■□□□□ 0.23
PNKP-213ENST00000599543 M0R1B8 84 aa16.46■□□□□ 0.23
PNKP-213ENST00000599543 SLC22A2O15244 555 aa16.46■□□□□ 0.23
PNKP-213ENST00000599543 TP53P04637 393 aaPredicted RBP16.46■□□□□ 0.23
PNKP-213ENST00000599543 ITGA5P08648 1049 aa16.46■□□□□ 0.23
PNKP-213ENST00000599543 GKN3PP0CG01 181 aa16.46■□□□□ 0.23
PNKP-213ENST00000599543 CXCR1P25024 350 aa16.46■□□□□ 0.23
PNKP-213ENST00000599543 CD40P25942 277 aa16.46■□□□□ 0.23
PNKP-213ENST00000599543 SPOCK1Q08629 439 aa16.46■□□□□ 0.23
PNKP-213ENST00000599543 SCARB2Q14108 478 aa16.46■□□□□ 0.23
PNKP-213ENST00000599543 NRF1Q16656 503 aa16.46■□□□□ 0.23
PNKP-213ENST00000599543 PAQR6Q6TCH4 344 aa16.46■□□□□ 0.23
PNKP-213ENST00000599543 DEPDC4Q8N2C3 294 aa16.46■□□□□ 0.23
PNKP-213ENST00000599543 CLIP4Q8N3C7 705 aa16.46■□□□□ 0.23
PNKP-213ENST00000599543 CACYBPQ9HB71 228 aaKnown RBP16.46■□□□□ 0.23
PNKP-213ENST00000599543 MRGBPQ9NV56 204 aa16.46■□□□□ 0.23
PNKP-213ENST00000599543 THUMPD1Q9NXG2 353 aaKnown RBP16.46■□□□□ 0.23
PNKP-213ENST00000599543 CALML5Q9NZT1 146 aa16.46■□□□□ 0.23
PNKP-213ENST00000599543 GDF2Q9UK05 429 aaPredicted RBP16.46■□□□□ 0.23
PNKP-213ENST00000599543 CORO2BQ9UQ03 480 aa16.46■□□□□ 0.23
PNKP-213ENST00000599543 A0A0G2JPF8 293 aa16.45■□□□□ 0.22
PNKP-213ENST00000599543 CDHR4A6H8M9 788 aa16.45■□□□□ 0.22
PNKP-213ENST00000599543 HNRNPCL2B2RXH8 293 aa16.45■□□□□ 0.22
PNKP-213ENST00000599543 HNRNPCL3B7ZW38 293 aa16.45■□□□□ 0.22
PNKP-213ENST00000599543 FRS3O43559 492 aa16.45■□□□□ 0.22
PNKP-213ENST00000599543 HNRNPCL1O60812 293 aaKnown RBP16.45■□□□□ 0.22
PNKP-213ENST00000599543 NDUFS7O75251 213 aa16.45■□□□□ 0.22
PNKP-213ENST00000599543 GPIP06744 558 aa16.45■□□□□ 0.22
PNKP-213ENST00000599543 THBS1P07996 1170 aa16.45■□□□□ 0.22
PNKP-213ENST00000599543 HNRNPCL4P0DMR1 293 aa16.45■□□□□ 0.22
PNKP-213ENST00000599543 PTNP21246 168 aa16.45■□□□□ 0.22
PNKP-213ENST00000599543 COPZ1P61923 177 aa16.45■□□□□ 0.22
PNKP-213ENST00000599543 TGFBR3Q03167 851 aa16.45■□□□□ 0.22
PNKP-213ENST00000599543 KRTAP1-1Q07627 177 aa16.45■□□□□ 0.22
PNKP-213ENST00000599543 SLC17A1Q14916 467 aa16.45■□□□□ 0.22
PNKP-213ENST00000599543 GABRA6Q16445 453 aa16.45■□□□□ 0.22
PNKP-213ENST00000599543 OTUD3Q5T2D3 398 aaPredicted RBP16.45■□□□□ 0.22
PNKP-213ENST00000599543 C9orf135Q5VTT2 229 aa16.45■□□□□ 0.22
PNKP-213ENST00000599543 COMTD1Q86VU5 262 aa16.45■□□□□ 0.22
PNKP-213ENST00000599543 CADM2Q8N3J6 435 aa16.45■□□□□ 0.22
PNKP-213ENST00000599543 C17orf78Q8N4C9 275 aa16.45■□□□□ 0.22
PNKP-213ENST00000599543 PCYOX1LQ8NBM8 494 aa16.45■□□□□ 0.22
PNKP-213ENST00000599543 RP9Q8TA86 221 aaKnown RBP16.45■□□□□ 0.22
PNKP-213ENST00000599543 BBS10Q8TAM1 723 aa16.45■□□□□ 0.22
PNKP-213ENST00000599543 ADAD1Q96M93 576 aaKnown RBP16.45■□□□□ 0.22
PNKP-213ENST00000599543 MUS81Q96NY9 551 aa16.45■□□□□ 0.22
PNKP-213ENST00000599543 KAT8Q9H7Z6 458 aaKnown RBP16.45■□□□□ 0.22
PNKP-213ENST00000599543 CHST2Q9Y4C5 530 aa16.45■□□□□ 0.22
PNKP-213ENST00000599543 GMEB1Q9Y692 573 aa16.45■□□□□ 0.22
PNKP-213ENST00000599543 COL6A5A8TX70 2615 aa16.45■□□□□ 0.22
PNKP-213ENST00000599543 KIAA1324LA8MWY0 1029 aaPredicted RBP16.44■□□□□ 0.22
PNKP-213ENST00000599543 E7EQL1 145 aa16.44■□□□□ 0.22
PNKP-213ENST00000599543 PDLIM1O00151 329 aa16.44■□□□□ 0.22
PNKP-213ENST00000599543 OPN1SWP03999 348 aa16.44■□□□□ 0.22
PNKP-213ENST00000599543 PRG2P13727 222 aa16.44■□□□□ 0.22
PNKP-213ENST00000599543 TTKP33981 857 aa16.44■□□□□ 0.22
PNKP-213ENST00000599543 NUDT2P50583 147 aa16.44■□□□□ 0.22
PNKP-213ENST00000599543 GZMMP51124 257 aa16.44■□□□□ 0.22
PNKP-213ENST00000599543 FOXG1P55316 489 aaPredicted RBP16.44■□□□□ 0.22
PNKP-213ENST00000599543 OR7A5Q15622 319 aa16.44■□□□□ 0.22
PNKP-213ENST00000599543 GLIPR1L2Q4G1C9 344 aa16.44■□□□□ 0.22
PNKP-213ENST00000599543 COQ5Q5HYK3 327 aa16.44■□□□□ 0.22
PNKP-213ENST00000599543 ZNF311Q5JNZ3 666 aa16.44■□□□□ 0.22
PNKP-213ENST00000599543 REEP3Q6NUK4 255 aa16.44■□□□□ 0.22
PNKP-213ENST00000599543 FBXL14Q8N1E6 418 aa16.44■□□□□ 0.22
PNKP-213ENST00000599543 MUC15Q8N387 334 aa16.44■□□□□ 0.22
PNKP-213ENST00000599543 C1orf162Q8NEQ5 155 aaPredicted RBP16.44■□□□□ 0.22
PNKP-213ENST00000599543 DHRS9Q9BPW9 319 aa16.44■□□□□ 0.22
PNKP-213ENST00000599543 CACNG6Q9BXT2 260 aa16.44■□□□□ 0.22
PNKP-213ENST00000599543 ADAM19Q9H013 955 aa16.44■□□□□ 0.22
PNKP-213ENST00000599543 TMEM38AQ9H6F2 299 aa16.44■□□□□ 0.22
PNKP-213ENST00000599543 BCL2L10Q9HD36 194 aa16.44■□□□□ 0.22
PNKP-213ENST00000599543 SLC7A10Q9NS82 523 aa16.44■□□□□ 0.22
PNKP-213ENST00000599543 CBLN4Q9NTU7 201 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms