RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 ARL5BQ96KC2 179 aa13.74□□□□□ -0.21
SS18-215ENST00000580642 SAMD8Q96LT4 415 aa13.74□□□□□ -0.21
SS18-215ENST00000580642 CNBD2Q96M20 576 aa13.74□□□□□ -0.21
SS18-215ENST00000580642 Q96MT0 163 aa13.74□□□□□ -0.21
SS18-215ENST00000580642 UBL7Q96S82 380 aaPredicted RBP13.74□□□□□ -0.21
SS18-215ENST00000580642 FN3KQ9H479 309 aa13.74□□□□□ -0.21
SS18-215ENST00000580642 CSAG2Q9Y5P2 127 aa13.74□□□□□ -0.21
SS18-215ENST00000580642 CNTRLQ7Z7A1 2325 aa13.74□□□□□ -0.21
SS18-215ENST00000580642 TRAV27A0A087WT01 109 aa13.73□□□□□ -0.21
SS18-215ENST00000580642 A0A1B0GVC2 190 aa13.73□□□□□ -0.21
SS18-215ENST00000580642 SH3D21A4FU49 640 aa13.73□□□□□ -0.21
SS18-215ENST00000580642 SHISA8B8ZZ34 492 aa13.73□□□□□ -0.21
SS18-215ENST00000580642 H3BML4 177 aa13.73□□□□□ -0.21
SS18-215ENST00000580642 SULT2B1O00204 365 aa13.73□□□□□ -0.21
SS18-215ENST00000580642 PLPP3O14495 311 aa13.73□□□□□ -0.21
SS18-215ENST00000580642 TFECO14948 347 aaPredicted RBP13.73□□□□□ -0.21
SS18-215ENST00000580642 TXNDC12O95881 172 aa13.73□□□□□ -0.21
SS18-215ENST00000580642 IFNGP01579 166 aa13.73□□□□□ -0.21
SS18-215ENST00000580642 CD14P08571 375 aa13.73□□□□□ -0.21
SS18-215ENST00000580642 GNAO1P09471 354 aa13.73□□□□□ -0.21
SS18-215ENST00000580642 IMPDH2P12268 514 aa13.73□□□□□ -0.21
SS18-215ENST00000580642 PCYT1AP49585 367 aa13.73□□□□□ -0.21
SS18-215ENST00000580642 AGFG1P52594 562 aaKnown RBP13.73□□□□□ -0.21
SS18-215ENST00000580642 FXYD6P3P58550 94 aa13.73□□□□□ -0.21
SS18-215ENST00000580642 EFNB1P98172 346 aa13.73□□□□□ -0.21
SS18-215ENST00000580642 FAM205BPQ63HN1 556 aa13.73□□□□□ -0.21
SS18-215ENST00000580642 MEX3DQ86XN8 651 aaKnown RBP13.73□□□□□ -0.21
SS18-215ENST00000580642 FAM26EQ8N5C1 309 aa13.73□□□□□ -0.21
SS18-215ENST00000580642 LRRC75AQ8NAA5 344 aa13.73□□□□□ -0.21
SS18-215ENST00000580642 OR8D4Q8NGM9 314 aa13.73□□□□□ -0.21
SS18-215ENST00000580642 OR5M1Q8NGP8 315 aa13.73□□□□□ -0.21
SS18-215ENST00000580642 C9orf43Q8TAL5 461 aaPredicted RBP13.73□□□□□ -0.21
SS18-215ENST00000580642 FAM81AQ8TBF8 368 aa13.73□□□□□ -0.21
SS18-215ENST00000580642 EXTL1Q92935 676 aa13.73□□□□□ -0.21
SS18-215ENST00000580642 PNPLA2Q96AD5 504 aa13.73□□□□□ -0.21
SS18-215ENST00000580642 SLC25A36Q96CQ1 311 aa13.73□□□□□ -0.21
SS18-215ENST00000580642 OR5B2Q96R09 309 aa13.73□□□□□ -0.21
SS18-215ENST00000580642 NAA11Q9BSU3 229 aaPredicted RBP13.73□□□□□ -0.21
SS18-215ENST00000580642 PLA2G12AQ9BZM1 189 aa13.73□□□□□ -0.21
SS18-215ENST00000580642 CHST11Q9NPF2 352 aa13.73□□□□□ -0.21
SS18-215ENST00000580642 RASD1Q9Y272 281 aa13.73□□□□□ -0.21
SS18-215ENST00000580642 NCOR2Q9Y618 2525 aa13.73□□□□□ -0.21
SS18-215ENST00000580642 TRGV5A0A0B4J1U4 118 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 SNTNA6NMZ2 147 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 FAM166BA8MTA8 275 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 LRRN3E7EW58 273 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 BLOC1S5-TXNDC5H3BN57 136 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 M0R082 166 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 IGHMP01871 453 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 CCDC159P0C7I6 412 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 CPN1P15169 458 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 PTNP21246 168 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 RPL4P36578 427 aaKnown RBP13.72□□□□□ -0.21
SS18-215ENST00000580642 CD97P48960 835 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 DIO1P49895 249 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 CHN2P52757 468 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 RPS3AP61247 264 aaKnown RBP13.72□□□□□ -0.21
SS18-215ENST00000580642 H3F3AP84243 136 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 MYBPC1Q00872 1141 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 IL5RAQ01344 420 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 RPL18Q07020 188 aaKnown RBP13.72□□□□□ -0.21
SS18-215ENST00000580642 PUDPQ08623 228 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 MAD2L1BPQ15013 274 aaPredicted RBP13.72□□□□□ -0.21
SS18-215ENST00000580642 OR7A5Q15622 319 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 RBM48Q5RL73 367 aaKnown RBP13.72□□□□□ -0.21
SS18-215ENST00000580642 TMEM201Q5SNT2 666 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 VASNQ6EMK4 673 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 THSD4Q6ZMP0 1018 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 PTCHD4Q6ZW05 846 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 PXKQ7Z7A4 578 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 GGNQ86UU5 652 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 MEIOBQ8N635 442 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 ATP6V1C2Q8NEY4 427 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 ANKK1Q8NFD2 765 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 OR2V1Q8NHB1 315 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 ZNF417Q8TAU3 575 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 HDAC2Q92769 488 aaKnown RBP13.72□□□□□ -0.21
SS18-215ENST00000580642 ADGRG7Q96K78 797 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 SNX18Q96RF0 628 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 ZNF587Q96SQ5 575 aaPredicted RBP13.72□□□□□ -0.21
SS18-215ENST00000580642 ARHGAP9Q9BRR9 750 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 IFT27Q9BW83 186 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 PRORYQ9H606 182 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 CMC2Q9NRP2 79 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 PLSCR2Q9NRY7 297 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 TAS2R5Q9NYW4 299 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 KLHL21Q9UJP4 597 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 BLOC1S6Q9UL45 172 aa13.72□□□□□ -0.21
SS18-215ENST00000580642 SURF4O15260 269 aa13.71□□□□□ -0.21
SS18-215ENST00000580642 AHCYL1O43865 530 aa13.71□□□□□ -0.21
SS18-215ENST00000580642 CLIC3O95833 236 aa13.71□□□□□ -0.21
SS18-215ENST00000580642 PDGFAP04085 211 aa13.71□□□□□ -0.21
SS18-215ENST00000580642 IGFBP1P08833 259 aaPredicted RBP13.71□□□□□ -0.21
SS18-215ENST00000580642 ZNF708P17019 499 aa13.71□□□□□ -0.21
SS18-215ENST00000580642 GABRB1P18505 474 aa13.71□□□□□ -0.21
SS18-215ENST00000580642 SFTPDP35247 375 aa13.71□□□□□ -0.21
SS18-215ENST00000580642 AQP2P41181 271 aa13.71□□□□□ -0.21
SS18-215ENST00000580642 LHX2P50458 406 aa13.71□□□□□ -0.21
SS18-215ENST00000580642 CARD18P57730 90 aa13.71□□□□□ -0.21
SS18-215ENST00000580642 OR2B6P58173 313 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms