RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 PRKACBP22694 351 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 OR3A2P47893 321 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 P2RY1P47900 373 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 MRPS21P82921 87 aaKnown RBP4.93□□□□□ -1.62
VPS53-219ENST00000576019 PSMD5Q16401 504 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 HAGHQ16775 308 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 SPATS1Q496A3 300 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 SLX4IPQ5VYV7 408 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 NEPROQ6NW34 567 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 HACD2Q6Y1H2 254 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 HSDL2Q6YN16 418 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 LEKR1Q6ZMV7 388 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 H2BFWTQ7Z2G1 175 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 MOB3BQ86TA1 216 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 PIGZQ86VD9 579 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 OR2L3Q8NG85 312 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 OR4K14Q8NGD5 310 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 GPX8Q8TED1 209 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 GLYATL2Q8WU03 294 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 PIBF1Q8WXW3 757 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 TMEM143Q96AN5 459 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 SGK3Q96BR1 496 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 OMA1Q96E52 524 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 SCRN2Q96FV2 425 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 PPP1R16AQ96I34 528 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 C2orf48Q96LS8 159 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 C20orf24Q9BUV8 137 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 IKZF5Q9H5V7 419 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 DCAF13Q9NV06 445 aaKnown RBP4.93□□□□□ -1.62
VPS53-219ENST00000576019 IL36GQ9NZH8 169 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 MBD2Q9UBB5 411 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 RHBDD3Q9Y3P4 386 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 HERC2O95714 4834 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 PLIN4Q96Q06 1357 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 HHLA1C9JL84 531 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 K7ERQ8 282 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 ZNF701M0R085 212 aaPredicted RBP4.92□□□□□ -1.62
VPS53-219ENST00000576019 SLC1A7O00341 560 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 LAD1O00515 517 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 GNA14O95837 355 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 ECDO95905 644 aaPredicted RBP4.92□□□□□ -1.62
VPS53-219ENST00000576019 IGSF6O95976 241 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 F10P00742 488 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 FRMD6-AS1P0C7T7 363 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 STAG3L2P0CL84 134 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 PRKAR1AP10644 381 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 HSPD1P10809 573 aaKnown RBP4.92□□□□□ -1.62
VPS53-219ENST00000576019 LIPCP11150 499 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 ZNF12P17014 697 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 GABRG2P18507 467 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 PGCP20142 388 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 PTNP21246 168 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 GIFP27352 417 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 RAB9AP51151 201 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 EFNB2P52799 333 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 PLP1P60201 277 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 ABCE1P61221 599 aaKnown RBP4.92□□□□□ -1.62
VPS53-219ENST00000576019 HERV-K104P61576 105 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 SP4Q02446 784 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 POU3F1Q03052 451 aaPredicted RBP4.92□□□□□ -1.62
VPS53-219ENST00000576019 SLC17A1Q14916 467 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 RBBP5Q15291 538 aaKnown RBP4.92□□□□□ -1.62
VPS53-219ENST00000576019 UBE2V2Q15819 145 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 HNRNPA1L2Q32P51 320 aaKnown RBP4.92□□□□□ -1.62
VPS53-219ENST00000576019 TMEM52BQ4KMG9 183 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 EID2Q8N6I1 236 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 TRIML2Q8N7C3 387 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 ICA1LQ8NDH6 482 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 OR1B1Q8NGR6 318 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 SUN5Q8TC36 379 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP4.92□□□□□ -1.62
VPS53-219ENST00000576019 NRGNQ92686 78 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 SLC38A4Q969I6 547 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 HMCESQ96FZ2 354 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 TIMD4Q96H15 378 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 LMLNQ96KR4 655 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 TMEM121Q9BTD3 319 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 ANKRD60Q9BZ19 345 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 SLC29A3Q9BZD2 475 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 PLA2G12AQ9BZM1 189 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 ROGDIQ9GZN7 287 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 FBXO44Q9H4M3 255 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 FKRPQ9H9S5 495 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 HIF1ANQ9NWT6 349 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 TEX10Q9NXF1 929 aaPredicted RBP4.92□□□□□ -1.62
VPS53-219ENST00000576019 MTCH1Q9NZJ7 389 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 TUBGCP4Q9UGJ1 667 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 TP53TG5Q9Y2B4 290 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 V9GYY5 206 aaPredicted RBP4.92□□□□□ -1.62
VPS53-219ENST00000576019 TRRAPQ9Y4A5 3859 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 CNTNAP2Q9UHC6 1331 aa4.92□□□□□ -1.62
VPS53-219ENST00000576019 ZGRF1Q86YA3 2104 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 HIVEP2P31629 2446 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 hCG_38984A0A1B0GV85 526 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 GSTTP1A0A1W2PQM5 241 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 NKX6-3A6NJ46 265 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 TMCO5BA8MYB1 307 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 EI24O14681 340 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 DIRAS1O95057 198 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 KLF8O95600 359 aaPredicted RBP4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms