RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 M0R082 166 aa27.52■■■□□ 2
CTCF-203ENST00000566078 MPZL2O60487 215 aa27.52■■■□□ 2
CTCF-203ENST00000566078 WBP4O75554 376 aaKnown RBP27.52■■■□□ 2
CTCF-203ENST00000566078 FMO3P31513 532 aa27.52■■■□□ 2
CTCF-203ENST00000566078 RPL18Q07020 188 aaKnown RBP27.52■■■□□ 2
CTCF-203ENST00000566078 MFSD13AQ14CX5 517 aa27.52■■■□□ 2
CTCF-203ENST00000566078 HYAL4Q2M3T9 481 aa27.52■■■□□ 2
CTCF-203ENST00000566078 LNX2Q8N448 690 aa27.52■■■□□ 2
CTCF-203ENST00000566078 ZNF417Q8TAU3 575 aa27.52■■■□□ 2
CTCF-203ENST00000566078 HDAC2Q92769 488 aaKnown RBP27.52■■■□□ 2
CTCF-203ENST00000566078 ZNF587Q96SQ5 575 aaPredicted RBP27.52■■■□□ 2
CTCF-203ENST00000566078 NCOR2Q9Y618 2525 aa27.52■■■□□ 2
CTCF-203ENST00000566078 MAGEA13PA6NCF6 341 aa27.51■■□□□ 1.99
CTCF-203ENST00000566078 PRKYO43930 277 aa27.51■■□□□ 1.99
CTCF-203ENST00000566078 SMNDC1O75940 238 aaKnown RBP eCLIP27.51■■□□□ 1.99
CTCF-203ENST00000566078 CELA3AP09093 270 aa27.51■■□□□ 1.99
CTCF-203ENST00000566078 TSPAN19P0C672 248 aa27.51■■□□□ 1.99
CTCF-203ENST00000566078 PPIAP62937 165 aaKnown RBP27.51■■□□□ 1.99
CTCF-203ENST00000566078 SGCBQ16585 318 aa27.51■■□□□ 1.99
CTCF-203ENST00000566078 ALG10Q5BKT4 473 aa27.51■■□□□ 1.99
CTCF-203ENST00000566078 IGFL3Q6UXB1 125 aa27.51■■□□□ 1.99
CTCF-203ENST00000566078 NDEL1Q9GZM8 345 aa27.51■■□□□ 1.99
CTCF-203ENST00000566078 ALKBH4Q9NXW9 302 aa27.51■■□□□ 1.99
CTCF-203ENST00000566078 BAIAP2Q9UQB8 552 aa27.51■■□□□ 1.99
CTCF-203ENST00000566078 HDGFL3Q9Y3E1 203 aa27.51■■□□□ 1.99
CTCF-203ENST00000566078 MGAQ8IWI9 3026 aa27.51■■□□□ 1.99
CTCF-203ENST00000566078 PTPRQQ9UMZ3 2332 aa27.5■■□□□ 1.99
CTCF-203ENST00000566078 SURF4O15260 269 aa27.5■■□□□ 1.99
CTCF-203ENST00000566078 HMGN1P05114 100 aa27.5■■□□□ 1.99
CTCF-203ENST00000566078 RAC1P63000 192 aa27.5■■□□□ 1.99
CTCF-203ENST00000566078 DPY19L2P2Q6ZN68 376 aa27.5■■□□□ 1.99
CTCF-203ENST00000566078 SLC22A16Q86VW1 577 aa27.5■■□□□ 1.99
CTCF-203ENST00000566078 OR8J1Q8NGP2 316 aa27.5■■□□□ 1.99
CTCF-203ENST00000566078 TRUB1Q8WWH5 349 aaKnown RBP27.5■■□□□ 1.99
CTCF-203ENST00000566078 PLEKHA8Q96JA3 519 aa27.5■■□□□ 1.99
CTCF-203ENST00000566078 MRPL39Q9NYK5 338 aaKnown RBP27.5■■□□□ 1.99
CTCF-203ENST00000566078 CORINQ9Y5Q5 1042 aa27.5■■□□□ 1.99
CTCF-203ENST00000566078 MKRN2OSH3BPM6 223 aa27.49■■□□□ 1.99
CTCF-203ENST00000566078 ACOT7O00154 380 aa27.49■■□□□ 1.99
CTCF-203ENST00000566078 SNRPGP62308 76 aaKnown RBP27.49■■□□□ 1.99
CTCF-203ENST00000566078 PMS2P3Q13401 168 aa27.49■■□□□ 1.99
CTCF-203ENST00000566078 SMN1Q16637 294 aaKnown RBP27.49■■□□□ 1.99
CTCF-203ENST00000566078 RBM48Q5RL73 367 aaKnown RBP27.49■■□□□ 1.99
CTCF-203ENST00000566078 FAM98AQ8NCA5 519 aaKnown RBP27.49■■□□□ 1.99
CTCF-203ENST00000566078 GPX7Q96SL4 187 aaPredicted RBP27.49■■□□□ 1.99
CTCF-203ENST00000566078 TLX2O43763 284 aaPredicted RBP27.49■■□□□ 1.99
CTCF-203ENST00000566078 ADORA3P0DMS8 318 aa27.49■■□□□ 1.99
CTCF-203ENST00000566078 TBR1Q16650 682 aa27.49■■□□□ 1.99
CTCF-203ENST00000566078 SLC35F1Q5T1Q4 408 aa27.49■■□□□ 1.99
CTCF-203ENST00000566078 UNQ6494/PRO21346Q6UXR6 183 aa27.49■■□□□ 1.99
CTCF-203ENST00000566078 LRRC75AQ8NAA5 344 aa27.49■■□□□ 1.99
CTCF-203ENST00000566078 ERMAPQ96PL5 475 aaPredicted RBP27.49■■□□□ 1.99
CTCF-203ENST00000566078 KATNB1Q9BVA0 655 aa27.49■■□□□ 1.99
CTCF-203ENST00000566078 ZNF696Q9H7X3 374 aa27.49■■□□□ 1.99
CTCF-203ENST00000566078 TAS2R5Q9NYW4 299 aa27.49■■□□□ 1.99
CTCF-203ENST00000566078 GPR52Q9Y2T5 361 aa27.49■■□□□ 1.99
CTCF-203ENST00000566078 GJE1A6NN92 205 aa27.48■■□□□ 1.99
CTCF-203ENST00000566078 SLC1A7O00341 560 aa27.48■■□□□ 1.99
CTCF-203ENST00000566078 SLC2A10O95528 541 aa27.48■■□□□ 1.99
CTCF-203ENST00000566078 PDGFAP04085 211 aa27.48■■□□□ 1.99
CTCF-203ENST00000566078 F13BP05160 661 aa27.48■■□□□ 1.99
CTCF-203ENST00000566078 GFRA1P56159 465 aa27.48■■□□□ 1.99
CTCF-203ENST00000566078 OR2B6P58173 313 aa27.48■■□□□ 1.99
CTCF-203ENST00000566078 FOXK2Q01167 660 aa27.48■■□□□ 1.99
CTCF-203ENST00000566078 PMP22Q01453 160 aa27.48■■□□□ 1.99
CTCF-203ENST00000566078 ARHGAP11AQ6P4F7 1023 aa27.48■■□□□ 1.99
CTCF-203ENST00000566078 FAM109AQ8N4B1 249 aa27.48■■□□□ 1.99
CTCF-203ENST00000566078 SCAIQ8N9R8 606 aa27.48■■□□□ 1.99
CTCF-203ENST00000566078 BPIFB6Q8NFQ5 453 aa27.48■■□□□ 1.99
CTCF-203ENST00000566078 TMEM163Q8TC26 289 aa27.48■■□□□ 1.99
CTCF-203ENST00000566078 QPCTLQ9NXS2 382 aa27.48■■□□□ 1.99
CTCF-203ENST00000566078 ADAM18Q9Y3Q7 739 aa27.48■■□□□ 1.99
CTCF-203ENST00000566078 IER3IP1Q9Y5U9 82 aa27.48■■□□□ 1.99
CTCF-203ENST00000566078 ZNF407Q9C0G0 2248 aa27.48■■□□□ 1.99
CTCF-203ENST00000566078 C11orf98E9PRG8 122 aa27.47■■□□□ 1.99
CTCF-203ENST00000566078 OR6A2O95222 327 aa27.47■■□□□ 1.99
CTCF-203ENST00000566078 NOS3P29474 1203 aa27.47■■□□□ 1.99
CTCF-203ENST00000566078 DIO1P49895 249 aa27.47■■□□□ 1.99
CTCF-203ENST00000566078 ERVK-25P63136 954 aa27.47■■□□□ 1.99
CTCF-203ENST00000566078 TEKQ02763 1124 aa27.47■■□□□ 1.99
CTCF-203ENST00000566078 MIB2Q96AX9 1013 aa27.47■■□□□ 1.99
CTCF-203ENST00000566078 KLHL15Q96M94 604 aa27.47■■□□□ 1.99
CTCF-203ENST00000566078 YTHDF1Q9BYJ9 559 aaKnown RBP27.47■■□□□ 1.99
CTCF-203ENST00000566078 SLC6A15Q9H2J7 730 aa27.47■■□□□ 1.99
CTCF-203ENST00000566078 CHST11Q9NPF2 352 aa27.47■■□□□ 1.99
CTCF-203ENST00000566078 NRIP3Q9NQ35 241 aa27.47■■□□□ 1.99
CTCF-203ENST00000566078 CLN6Q9NWW5 311 aa27.47■■□□□ 1.99
CTCF-203ENST00000566078 SLC6A5Q9Y345 797 aa27.47■■□□□ 1.99
CTCF-203ENST00000566078 SULT2B1O00204 365 aa27.46■■□□□ 1.99
CTCF-203ENST00000566078 PLPP3O14495 311 aa27.46■■□□□ 1.99
CTCF-203ENST00000566078 FZD7O75084 574 aa27.46■■□□□ 1.99
CTCF-203ENST00000566078 POU3F2P20265 443 aaPredicted RBP27.46■■□□□ 1.99
CTCF-203ENST00000566078 CTXN1P60606 82 aa27.46■■□□□ 1.99
CTCF-203ENST00000566078 CXADRP78310 365 aa27.46■■□□□ 1.99
CTCF-203ENST00000566078 EFNB1P98172 346 aa27.46■■□□□ 1.99
CTCF-203ENST00000566078 TOP3AQ13472 1001 aaPredicted RBP27.46■■□□□ 1.99
CTCF-203ENST00000566078 ZNF169Q14929 603 aaPredicted RBP27.46■■□□□ 1.99
CTCF-203ENST00000566078 EXTL1Q92935 676 aa27.46■■□□□ 1.99
CTCF-203ENST00000566078 ZNF566Q969W8 418 aa27.46■■□□□ 1.99
CTCF-203ENST00000566078 DNAJC27Q9NZQ0 273 aa27.46■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms