RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 NMNAT3Q96T66 252 aa23.9■■□□□ 1.42
CCDC88C-205ENST00000553403 DEFB126Q9BYW3 111 aa23.9■■□□□ 1.42
CCDC88C-205ENST00000553403 ZNF700Q9H0M5 742 aa23.9■■□□□ 1.42
CCDC88C-205ENST00000553403 TOR4AQ9NXH8 423 aa23.9■■□□□ 1.42
CCDC88C-205ENST00000553403 PTRH2Q9Y3E5 179 aaKnown RBP23.9■■□□□ 1.42
CCDC88C-205ENST00000553403 NOX1Q9Y5S8 564 aa23.9■■□□□ 1.42
CCDC88C-205ENST00000553403 LAMA1P25391 3075 aa23.9■■□□□ 1.42
CCDC88C-205ENST00000553403 PTPRZ1P23471 2315 aaPredicted RBP23.9■■□□□ 1.42
CCDC88C-205ENST00000553403 TMEM72A0PK05 275 aa23.89■■□□□ 1.42
CCDC88C-205ENST00000553403 A8MVM7 634 aa23.89■■□□□ 1.42
CCDC88C-205ENST00000553403 IL1AP01583 271 aa23.89■■□□□ 1.42
CCDC88C-205ENST00000553403 MT-ND5P03915 603 aa23.89■■□□□ 1.42
CCDC88C-205ENST00000553403 UMODP07911 640 aa23.89■■□□□ 1.42
CCDC88C-205ENST00000553403 MRPL3P09001 348 aaKnown RBP23.89■■□□□ 1.42
CCDC88C-205ENST00000553403 GAAP10253 952 aa23.89■■□□□ 1.42
CCDC88C-205ENST00000553403 SDHAP31040 664 aa23.89■■□□□ 1.42
CCDC88C-205ENST00000553403 RPS19P39019 145 aaKnown RBP23.89■■□□□ 1.42
CCDC88C-205ENST00000553403 SLC25A1P53007 311 aa23.89■■□□□ 1.42
CCDC88C-205ENST00000553403 RPL18Q07020 188 aaKnown RBP23.89■■□□□ 1.42
CCDC88C-205ENST00000553403 ZNF800Q2TB10 664 aaPredicted RBP eCLIP23.89■■□□□ 1.42
CCDC88C-205ENST00000553403 CRTC2Q53ET0 693 aaPredicted RBP23.89■■□□□ 1.42
CCDC88C-205ENST00000553403 MAMDC2Q7Z304 686 aaPredicted RBP23.89■■□□□ 1.42
CCDC88C-205ENST00000553403 GPALPP1Q8IXQ4 340 aa23.89■■□□□ 1.42
CCDC88C-205ENST00000553403 FNDC8Q8TC99 324 aa23.89■■□□□ 1.42
CCDC88C-205ENST00000553403 TMEM203Q969S6 136 aa23.89■■□□□ 1.42
CCDC88C-205ENST00000553403 TBX5Q99593 518 aa23.89■■□□□ 1.42
CCDC88C-205ENST00000553403 MED18Q9BUE0 208 aa23.89■■□□□ 1.42
CCDC88C-205ENST00000553403 C6orf62Q9GZU0 229 aaPredicted RBP23.89■■□□□ 1.42
CCDC88C-205ENST00000553403 ISG20L2Q9H9L3 353 aaKnown RBP23.89■■□□□ 1.42
CCDC88C-205ENST00000553403 GSTK1Q9Y2Q3 226 aa23.89■■□□□ 1.42
CCDC88C-205ENST00000553403 PCDHGB7Q9Y5F8 929 aa23.89■■□□□ 1.42
CCDC88C-205ENST00000553403 COL27A1Q8IZC6 1860 aaPredicted RBP23.89■■□□□ 1.41
CCDC88C-205ENST00000553403 TEX13CA0A0J9YWL9 993 aa23.89■■□□□ 1.41
CCDC88C-205ENST00000553403 PNMA8CA0A1B0GUJ8 204 aa23.89■■□□□ 1.41
CCDC88C-205ENST00000553403 FBXO45P0C2W1 286 aa23.89■■□□□ 1.41
CCDC88C-205ENST00000553403 GALP22466 123 aa23.89■■□□□ 1.41
CCDC88C-205ENST00000553403 S100A5P33763 92 aa23.89■■□□□ 1.41
CCDC88C-205ENST00000553403 ZNF85Q03923 595 aa23.89■■□□□ 1.41
CCDC88C-205ENST00000553403 GPR139Q6DWJ6 353 aa23.89■■□□□ 1.41
CCDC88C-205ENST00000553403 JAZF1Q86VZ6 243 aa23.89■■□□□ 1.41
CCDC88C-205ENST00000553403 ZFP41Q8N8Y5 198 aa23.89■■□□□ 1.41
CCDC88C-205ENST00000553403 Q96M85 177 aa23.89■■□□□ 1.41
CCDC88C-205ENST00000553403 KCTD7Q96MP8 289 aa23.89■■□□□ 1.41
CCDC88C-205ENST00000553403 CNN2Q99439 309 aaKnown RBP23.89■■□□□ 1.41
CCDC88C-205ENST00000553403 PTDSS2Q9BVG9 487 aa23.89■■□□□ 1.41
CCDC88C-205ENST00000553403 CRNNQ9UBG3 495 aaPredicted RBP23.89■■□□□ 1.41
CCDC88C-205ENST00000553403 YARS2Q9Y2Z4 477 aaKnown RBP23.89■■□□□ 1.41
CCDC88C-205ENST00000553403 DMDP11532 3685 aa23.88■■□□□ 1.41
CCDC88C-205ENST00000553403 IGHV1-45A0A0A0MS14 117 aa23.88■■□□□ 1.41
CCDC88C-205ENST00000553403 OR6C68A6NDL8 312 aa23.88■■□□□ 1.41
CCDC88C-205ENST00000553403 TAF4O00268 1085 aa23.88■■□□□ 1.41
CCDC88C-205ENST00000553403 KLF7O75840 302 aaPredicted RBP23.88■■□□□ 1.41
CCDC88C-205ENST00000553403 HLA-DPB1P04440 258 aa23.88■■□□□ 1.41
CCDC88C-205ENST00000553403 OR2T7P0C7T2 308 aa23.88■■□□□ 1.41
CCDC88C-205ENST00000553403 SPI1P17947 270 aa23.88■■□□□ 1.41
CCDC88C-205ENST00000553403 CELP19835 753 aa23.88■■□□□ 1.41
CCDC88C-205ENST00000553403 MSX1P28360 303 aa23.88■■□□□ 1.41
CCDC88C-205ENST00000553403 RORCP51449 518 aa23.88■■□□□ 1.41
CCDC88C-205ENST00000553403 EXT1Q16394 746 aa23.88■■□□□ 1.41
CCDC88C-205ENST00000553403 POMZP3Q6PJE2 187 aa23.88■■□□□ 1.41
CCDC88C-205ENST00000553403 OR2Y1Q8NGV0 311 aa23.88■■□□□ 1.41
CCDC88C-205ENST00000553403 OR2T27Q8NH04 317 aa23.88■■□□□ 1.41
CCDC88C-205ENST00000553403 OR6S1Q8NH40 331 aa23.88■■□□□ 1.41
CCDC88C-205ENST00000553403 ZMYND19Q96E35 227 aaPredicted RBP23.88■■□□□ 1.41
CCDC88C-205ENST00000553403 NUAK2Q9H093 628 aa23.88■■□□□ 1.41
CCDC88C-205ENST00000553403 TRIM36Q9NQ86 728 aa23.88■■□□□ 1.41
CCDC88C-205ENST00000553403 RIF1Q5UIP0 2472 aaKnown RBP23.88■■□□□ 1.41
CCDC88C-205ENST00000553403 CD63P08962 238 aa23.87■■□□□ 1.41
CCDC88C-205ENST00000553403 ZNF12P17014 697 aa23.87■■□□□ 1.41
CCDC88C-205ENST00000553403 CD53P19397 219 aa23.87■■□□□ 1.41
CCDC88C-205ENST00000553403 RAB15P59190 212 aa23.87■■□□□ 1.41
CCDC88C-205ENST00000553403 TAS2R43P59537 309 aa23.87■■□□□ 1.41
CCDC88C-205ENST00000553403 FABP5Q01469 135 aa23.87■■□□□ 1.41
CCDC88C-205ENST00000553403 BTBD16Q32M84 506 aa23.87■■□□□ 1.41
CCDC88C-205ENST00000553403 DCAF12Q5T6F0 453 aa23.87■■□□□ 1.41
CCDC88C-205ENST00000553403 FAM69AQ5T7M9 428 aa23.87■■□□□ 1.41
CCDC88C-205ENST00000553403 FAM69BQ5VUD6 431 aa23.87■■□□□ 1.41
CCDC88C-205ENST00000553403 C22orf42Q6IC83 251 aa23.87■■□□□ 1.41
CCDC88C-205ENST00000553403 LEG1Q6P5S2 330 aa23.87■■□□□ 1.41
CCDC88C-205ENST00000553403 SUMF1Q8NBK3 374 aa23.87■■□□□ 1.41
CCDC88C-205ENST00000553403 GALNT6Q8NCL4 622 aa23.87■■□□□ 1.41
CCDC88C-205ENST00000553403 LSM14AQ8ND56 463 aaKnown RBP23.87■■□□□ 1.41
CCDC88C-205ENST00000553403 TM9SF2Q99805 663 aa23.87■■□□□ 1.41
CCDC88C-205ENST00000553403 STRADBQ9C0K7 418 aa23.87■■□□□ 1.41
CCDC88C-205ENST00000553403 SDHAF3Q9NRP4 125 aa23.87■■□□□ 1.41
CCDC88C-205ENST00000553403 TNFSF12-TNFSF13A0A0A6YY99 330 aa23.86■■□□□ 1.41
CCDC88C-205ENST00000553403 OR2J2O76002 312 aa23.86■■□□□ 1.41
CCDC88C-205ENST00000553403 DKK1O94907 266 aa23.86■■□□□ 1.41
CCDC88C-205ENST00000553403 CDKN2AP42771 156 aaKnown RBP23.86■■□□□ 1.41
CCDC88C-205ENST00000553403 DBPQ10586 325 aaPredicted RBP23.86■■□□□ 1.41
CCDC88C-205ENST00000553403 NTRK2Q16620 822 aa23.86■■□□□ 1.41
CCDC88C-205ENST00000553403 C1orf140Q5VVS0 124 aa23.86■■□□□ 1.41
CCDC88C-205ENST00000553403 ARIH2OSQ8N7S6 290 aa23.86■■□□□ 1.41
CCDC88C-205ENST00000553403 IMMP1LQ96LU5 166 aa23.86■■□□□ 1.41
CCDC88C-205ENST00000553403 FAM186AA6NE01 2351 aa23.86■■□□□ 1.41
CCDC88C-205ENST00000553403 IGLV3-32A0A0A0MS00 114 aa23.86■■□□□ 1.41
CCDC88C-205ENST00000553403 A0A1W2PQL4 384 aaPredicted RBP23.86■■□□□ 1.41
CCDC88C-205ENST00000553403 GLCEO94923 617 aa23.86■■□□□ 1.41
CCDC88C-205ENST00000553403 CDRT1O95170 752 aa23.86■■□□□ 1.41
CCDC88C-205ENST00000553403 PRKCAP17252 672 aa23.86■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms