RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 SNTB1Q13884 538 aaKnown RBP13.19□□□□□ -0.3
LIMS1-215ENST00000544547 OR7A5Q15622 319 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 ZNF805Q5CZA5 627 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 TTLL10Q6ZVT0 673 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 LINC00518Q8N0U6 118 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 TMED6Q8WW62 240 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 FOXRED1Q96CU9 486 aaPredicted RBP13.19□□□□□ -0.3
LIMS1-215ENST00000544547 NECAB3Q96P71 396 aaPredicted RBP13.19□□□□□ -0.3
LIMS1-215ENST00000544547 SEC61A2Q9H9S3 476 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 FGF20Q9NP95 211 aaPredicted RBP13.19□□□□□ -0.3
LIMS1-215ENST00000544547 ZNF878C9JN71 531 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 ZNF208O43345 1280 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 MED6O75586 246 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 LATS1O95835 1130 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 NFATC4Q14934 902 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 ZNF674Q2M3X9 581 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 HENMT1Q5T8I9 393 aaKnown RBP13.19□□□□□ -0.3
LIMS1-215ENST00000544547 RPL13AP3Q6NVV1 102 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 GPAT4Q86UL3 456 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 SIRT6Q8N6T7 355 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 OR51D1Q8NGF3 324 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 ZC3HAV1LQ96H79 300 aaKnown RBP13.19□□□□□ -0.3
LIMS1-215ENST00000544547 FOXN4Q96NZ1 517 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 TEAD3Q99594 435 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 SULT4A1Q9BR01 284 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 NDRG3Q9UGV2 375 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 ZNF726A6NNF4 738 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 MCRIP1C9JLW8 97 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 GABARAPH6UMI1 98 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 C1orf105O95561 183 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 DRD2P14416 443 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 NPPBP16860 134 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 ATF1P18846 271 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 CPT2P23786 658 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 SGCBQ16585 318 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 TMEM71Q6P5X7 295 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 ERN2Q76MJ5 926 aaKnown RBP13.19□□□□□ -0.3
LIMS1-215ENST00000544547 OR4D10Q8NGI6 311 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 FAM46BQ96A09 425 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 HCAR1Q9BXC0 346 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 SLC25A19Q9HC21 320 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 SERINC1Q9NRX5 453 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 NTMQ9P121 344 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 GPR160Q9UJ42 338 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 SLC35A3Q9Y2D2 325 aa13.19□□□□□ -0.3
LIMS1-215ENST00000544547 SCDO00767 359 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 SRMP19623 302 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 TUBG1P23258 451 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 RAB13P51153 203 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 FOXK2Q01167 660 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 CBFBQ13951 182 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 SSX2Q16385 188 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 ITPRIPL2Q3MIP1 535 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 ZNF683Q8IZ20 524 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 OR2AK2Q8NG84 335 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 OR4K14Q8NGD5 310 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 SETD7Q8WTS6 366 aaKnown RBP13.18□□□□□ -0.3
LIMS1-215ENST00000544547 HIST1H2AAQ96QV6 131 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 TNFRSF13CQ96RJ3 184 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 OR8D2Q9GZM6 311 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 GLIPR2Q9H4G4 154 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 GRHPRQ9UBQ7 328 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 C1orf226A1L170 272 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 PYCARD-AS1I3L0S3 204 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 KCNJ13O60928 360 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 ADAMTS4O75173 837 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 MPC2O95563 127 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 TXNDC12O95881 172 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 RAB40ALP0C0E4 278 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 CDK2P24941 298 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 ARRB1P49407 418 aaPredicted RBP13.18□□□□□ -0.3
LIMS1-215ENST00000544547 ZNF565Q8N9K5 539 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 BVESQ8NE79 360 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 GPR32P1Q8NGA4 272 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 RAB40AQ8WXH6 277 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 LDAHQ9H6V9 325 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 A4GALTQ9NPC4 353 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 HRASLS2Q9NWW9 162 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 ABI3Q9P2A4 366 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 C9J4A7 227 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 C1SP09871 688 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 CLUP10909 449 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 MAKP20794 623 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 HLA-FP30511 346 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 BAMBIQ13145 260 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 PRRT3Q5FWE3 981 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 OR4D9Q8NGE8 314 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 FIBINQ8TAL6 211 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 EID2BQ96D98 161 aa13.18□□□□□ -0.3
LIMS1-215ENST00000544547 ACSS1Q9NUB1 689 aaPredicted RBP13.18□□□□□ -0.3
LIMS1-215ENST00000544547 A0A1B0GUH1 482 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 FAM74A7A6NL05 159 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 SULT1C2O00338 296 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 FFAR1O14842 300 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 IFNA21P01568 189 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 GXYLT1Q4G148 440 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 FAM74A3Q4VXF1 159 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 PDZD11Q5EBL8 140 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 TMEM156Q8N614 296 aa13.17□□□□□ -0.3
LIMS1-215ENST00000544547 ADAT1Q9BUB4 502 aaKnown RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms