RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 SLC6A16Q9GZN6 736 aa7.38□□□□□ -1.23
PDLIM5-221ENST00000542407 OR51J1Q9H342 316 aa7.38□□□□□ -1.23
PDLIM5-221ENST00000542407 GSX1Q9H4S2 264 aaPredicted RBP7.38□□□□□ -1.23
PDLIM5-221ENST00000542407 REEP4Q9H6H4 257 aa7.38□□□□□ -1.23
PDLIM5-221ENST00000542407 IMP3Q9NV31 184 aaKnown RBP7.38□□□□□ -1.23
PDLIM5-221ENST00000542407 RHCGQ9UBD6 479 aa7.38□□□□□ -1.23
PDLIM5-221ENST00000542407 GPR160Q9UJ42 338 aa7.38□□□□□ -1.23
PDLIM5-221ENST00000542407 J3KTA2 159 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 LCMT2O60294 686 aaKnown RBP7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 TPST2O60704 377 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 VAMP5O95183 116 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 SOX14O95416 240 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 IGFBP4P22692 258 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 BSGP35613 385 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 CCR8P51685 355 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 MVDP53602 400 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 POU4F2Q12837 409 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 KHDRBS2Q5VWX1 349 aaKnown RBP7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 Q6ZS52 159 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 UBE3DQ7Z6J8 389 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 LHFPL4Q7Z7J7 247 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 PPP1R3BQ86XI6 285 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 MMP21Q8N119 569 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 BBS1Q8NFJ9 593 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 FAM3CQ92520 227 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 S100PBPQ96BU1 408 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 TREX2Q9BQ50 279 aaPredicted RBP7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 SPRTNQ9H040 489 aaPredicted RBP7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 TOLLIPQ9H0E2 274 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 SYNPO2LQ9H987 977 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 SLC6A20Q9NP91 592 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 EMC7Q9NPA0 242 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 SLC2A4RGQ9NR83 387 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 ZBTB32Q9Y2Y4 487 aaPredicted RBP7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 SNX11Q9Y5W9 270 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 SEMG1P04279 462 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 IGHV4-34P06331 123 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 KLK1P06870 262 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 RHCEP18577 417 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 RAB3BP20337 219 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 HNRNPA2B1P22626 353 aaKnown RBP7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 RPS25P62851 125 aaKnown RBP7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 PPP3R1P63098 170 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 PRDX1Q06830 199 aaKnown RBP7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 TNFRSF9Q07011 255 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 MICAQ29983 383 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 TM4SF20Q53R12 229 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 WASH2PQ6VEQ5 465 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 NRROSQ86YC3 692 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 GID4Q8IVV7 300 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 RNF113BQ8IZP6 322 aaKnown RBP7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 CLDN22Q8N7P3 220 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 CCL4L1Q8NHW4 92 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 TM9SF4Q92544 642 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 GCDHQ92947 438 aaPredicted RBP7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 PRAP1Q96NZ9 151 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 ERMAPQ96PL5 475 aaPredicted RBP7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 GAL3ST4Q96RP7 486 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 AIF1LQ9BQI0 150 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 SEMA4CQ9C0C4 833 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 PPP1R3EQ9H7J1 279 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 KIR3DX1Q9H7L2 352 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 GPATCH2Q9NW75 528 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 C2orf42Q9NWW7 574 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 NDUFB11Q9NX14 153 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 LYARQ9NX58 379 aaKnown RBP7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 SLCO1C1Q9NYB5 712 aa7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 CNOT2Q9NZN8 540 aaKnown RBP7.37□□□□□ -1.23
PDLIM5-221ENST00000542407 BRWD1Q9NSI6 2320 aa7.36□□□□□ -1.23
PDLIM5-221ENST00000542407 A0A1W2PRB8 838 aa7.36□□□□□ -1.23
PDLIM5-221ENST00000542407 FAM227AF5H4B4 570 aa7.36□□□□□ -1.23
PDLIM5-221ENST00000542407 H3BN98 237 aa7.36□□□□□ -1.23
PDLIM5-221ENST00000542407 PDCD5O14737 125 aa7.36□□□□□ -1.23
PDLIM5-221ENST00000542407 LANCL1O43813 399 aa7.36□□□□□ -1.23
PDLIM5-221ENST00000542407 GPR4P46093 362 aa7.36□□□□□ -1.23
PDLIM5-221ENST00000542407 CDKN1BP46527 198 aa7.36□□□□□ -1.23
PDLIM5-221ENST00000542407 SRP9P49458 86 aaKnown RBP7.36□□□□□ -1.23
PDLIM5-221ENST00000542407 AFF3P51826 1226 aaKnown RBP7.36□□□□□ -1.23
PDLIM5-221ENST00000542407 TAS2R50P59544 299 aa7.36□□□□□ -1.23
PDLIM5-221ENST00000542407 FAM69AQ5T7M9 428 aa7.36□□□□□ -1.23
PDLIM5-221ENST00000542407 TMEM108Q6UXF1 575 aa7.36□□□□□ -1.23
PDLIM5-221ENST00000542407 ZNF730Q6ZMV8 503 aa7.36□□□□□ -1.23
PDLIM5-221ENST00000542407 ZNF813Q6ZN06 617 aa7.36□□□□□ -1.23
PDLIM5-221ENST00000542407 SMIM15Q7Z3B0 74 aa7.36□□□□□ -1.23
PDLIM5-221ENST00000542407 LAPTM4BQ86VI4 370 aa7.36□□□□□ -1.23
PDLIM5-221ENST00000542407 SLC22A18ASQ8N1D0 253 aa7.36□□□□□ -1.23
PDLIM5-221ENST00000542407 SYNPOQ8N3V7 929 aa7.36□□□□□ -1.23
PDLIM5-221ENST00000542407 AQP11Q8NBQ7 271 aa7.36□□□□□ -1.23
PDLIM5-221ENST00000542407 POP5Q969H6 163 aaKnown RBP7.36□□□□□ -1.23
PDLIM5-221ENST00000542407 FBXO17Q96EF6 278 aa7.36□□□□□ -1.23
PDLIM5-221ENST00000542407 WDR92Q96MX6 357 aa7.36□□□□□ -1.23
PDLIM5-221ENST00000542407 F2RL3Q96RI0 385 aa7.36□□□□□ -1.23
PDLIM5-221ENST00000542407 PHF7Q9BWX1 381 aaPredicted RBP7.36□□□□□ -1.23
PDLIM5-221ENST00000542407 RAB11FIP5Q9BXF6 653 aa7.36□□□□□ -1.23
PDLIM5-221ENST00000542407 UBE2ZQ9H832 354 aaPredicted RBP7.36□□□□□ -1.23
PDLIM5-221ENST00000542407 SIRT7Q9NRC8 400 aa7.36□□□□□ -1.23
PDLIM5-221ENST00000542407 MED17Q9NVC6 651 aa7.36□□□□□ -1.23
PDLIM5-221ENST00000542407 C14orf105Q9NVL8 296 aa7.36□□□□□ -1.23
PDLIM5-221ENST00000542407 C4orf51C9J302 202 aa7.36□□□□□ -1.23
PDLIM5-221ENST00000542407 TNFRSF10CO14798 259 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms