RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-210ENST00000540975 TRAPPC3O43617 180 aa3.79□□□□□ -1.8
YBX3-210ENST00000540975 CA11O75493 328 aa3.79□□□□□ -1.8
YBX3-210ENST00000540975 CBR3O75828 277 aa3.79□□□□□ -1.8
YBX3-210ENST00000540975 GNA14O95837 355 aa3.79□□□□□ -1.8
YBX3-210ENST00000540975 CLUP10909 449 aa3.79□□□□□ -1.8
YBX3-210ENST00000540975 NOVA1P51513 510 aaKnown RBP3.79□□□□□ -1.8
YBX3-210ENST00000540975 TLE4Q04727 773 aa3.79□□□□□ -1.8
YBX3-210ENST00000540975 ENPEPQ07075 957 aa3.79□□□□□ -1.8
YBX3-210ENST00000540975 CDKN3Q16667 212 aa3.79□□□□□ -1.8
YBX3-210ENST00000540975 NDUFA5Q16718 116 aa3.79□□□□□ -1.8
YBX3-210ENST00000540975 TMEM52BQ4KMG9 183 aa3.79□□□□□ -1.8
YBX3-210ENST00000540975 LIN9Q5TKA1 542 aa3.79□□□□□ -1.8
YBX3-210ENST00000540975 DEGS2Q6QHC5 323 aa3.79□□□□□ -1.8
YBX3-210ENST00000540975 DNM1P46Q6ZS02 220 aa3.79□□□□□ -1.8
YBX3-210ENST00000540975 HSD11B1LQ7Z5J1 315 aa3.79□□□□□ -1.8
YBX3-210ENST00000540975 LRRC6Q86X45 466 aa3.79□□□□□ -1.8
YBX3-210ENST00000540975 CCNYL1Q8N7R7 359 aa3.79□□□□□ -1.8
YBX3-210ENST00000540975 CNNM3Q8NE01 707 aa3.79□□□□□ -1.8
YBX3-210ENST00000540975 ZNF680Q8NEM1 530 aa3.79□□□□□ -1.8
YBX3-210ENST00000540975 TMEM186Q96B77 213 aa3.79□□□□□ -1.8
YBX3-210ENST00000540975 NSMCE2Q96MF7 247 aa3.79□□□□□ -1.8
YBX3-210ENST00000540975 CCDC77Q9BR77 488 aa3.79□□□□□ -1.8
YBX3-210ENST00000540975 TMEM121Q9BTD3 319 aa3.79□□□□□ -1.8
YBX3-210ENST00000540975 EDEM2Q9BV94 578 aa3.79□□□□□ -1.8
YBX3-210ENST00000540975 FRMD8P1Q9BZ68 369 aaPredicted RBP3.79□□□□□ -1.8
YBX3-210ENST00000540975 MRPL37Q9BZE1 423 aaKnown RBP3.79□□□□□ -1.8
YBX3-210ENST00000540975 CENPHQ9H3R5 247 aa3.79□□□□□ -1.8
YBX3-210ENST00000540975 GPN2Q9H9Y4 310 aaPredicted RBP3.79□□□□□ -1.8
YBX3-210ENST00000540975 MRPL40Q9NQ50 206 aaKnown RBP3.79□□□□□ -1.8
YBX3-210ENST00000540975 USP16Q9Y5T5 823 aa3.79□□□□□ -1.8
YBX3-210ENST00000540975 IQSEC2Q5JU85 1478 aa3.79□□□□□ -1.8
YBX3-210ENST00000540975 PIK3C2GO75747 1445 aa3.78□□□□□ -1.8
YBX3-210ENST00000540975 ERBINQ96RT1 1412 aa3.78□□□□□ -1.8
YBX3-210ENST00000540975 YTHDC2Q9H6S0 1430 aaKnown RBP3.78□□□□□ -1.8
YBX3-210ENST00000540975 LRRIQ1Q96JM4 1722 aa3.78□□□□□ -1.8
YBX3-210ENST00000540975 PBRM1Q86U86 1689 aa3.78□□□□□ -1.8
YBX3-210ENST00000540975 NEURL4Q96JN8 1562 aa3.78□□□□□ -1.8
YBX3-210ENST00000540975 HECW2Q9P2P5 1572 aa3.78□□□□□ -1.8
YBX3-210ENST00000540975 MAST1Q9Y2H9 1570 aa3.78□□□□□ -1.8
YBX3-210ENST00000540975 LOC100506127A0A0U1RQW1 187 aa3.78□□□□□ -1.8
YBX3-210ENST00000540975 SNTNA6NMZ2 147 aa3.78□□□□□ -1.8
YBX3-210ENST00000540975 USP27XA6NNY8 438 aa3.78□□□□□ -1.8
YBX3-210ENST00000540975 CXCL11O14625 94 aa3.78□□□□□ -1.8
YBX3-210ENST00000540975 RRP8O43159 456 aaKnown RBP3.78□□□□□ -1.8
YBX3-210ENST00000540975 SHOX2O60902 331 aaPredicted RBP3.78□□□□□ -1.8
YBX3-210ENST00000540975 RBBP9O75884 186 aa3.78□□□□□ -1.8
YBX3-210ENST00000540975 PSG2P11465 335 aa3.78□□□□□ -1.8
YBX3-210ENST00000540975 PRPS2P11908 318 aa3.78□□□□□ -1.8
YBX3-210ENST00000540975 BCKDHAP12694 445 aa3.78□□□□□ -1.8
YBX3-210ENST00000540975 XRCC1P18887 633 aaPredicted RBP3.78□□□□□ -1.8
YBX3-210ENST00000540975 NUP62P37198 522 aaPredicted RBP3.78□□□□□ -1.8
YBX3-210ENST00000540975 GPX6P59796 221 aa3.78□□□□□ -1.8
YBX3-210ENST00000540975 ELP6Q0PNE2 266 aa3.78□□□□□ -1.8
YBX3-210ENST00000540975 XRCC4Q13426 336 aa3.78□□□□□ -1.8
YBX3-210ENST00000540975 ZMYND11Q15326 602 aa3.78□□□□□ -1.8
YBX3-210ENST00000540975 ALX1Q15699 326 aa3.78□□□□□ -1.8
YBX3-210ENST00000540975 CLVS2Q5SYC1 327 aa3.78□□□□□ -1.8
YBX3-210ENST00000540975 C12orf60Q5U649 245 aa3.78□□□□□ -1.8
YBX3-210ENST00000540975 ZSCAN25Q6NSZ9 544 aa3.78□□□□□ -1.8
YBX3-210ENST00000540975 TPRA1Q86W33 373 aa3.78□□□□□ -1.8
YBX3-210ENST00000540975 PLA2G4DQ86XP0 818 aa3.78□□□□□ -1.8
YBX3-210ENST00000540975 ALLCQ8N6M5 410 aa3.78□□□□□ -1.8
YBX3-210ENST00000540975 TTLQ8NG68 377 aa3.78□□□□□ -1.8
YBX3-210ENST00000540975 ZNF461Q8TAF7 563 aa3.78□□□□□ -1.8
YBX3-210ENST00000540975 ASZ1Q8WWH4 475 aa3.78□□□□□ -1.8
YBX3-210ENST00000540975 TRUB1Q8WWH5 349 aaKnown RBP3.78□□□□□ -1.8
YBX3-210ENST00000540975 CHMP6Q96FZ7 201 aa3.78□□□□□ -1.8
YBX3-210ENST00000540975 FAM111AQ96PZ2 611 aa3.78□□□□□ -1.8
YBX3-210ENST00000540975 PLIN2Q99541 437 aa3.78□□□□□ -1.8
YBX3-210ENST00000540975 TMEM231Q9H6L2 316 aa3.78□□□□□ -1.8
YBX3-210ENST00000540975 C12orf4Q9NQ89 552 aa3.78□□□□□ -1.8
YBX3-210ENST00000540975 CD274Q9NZQ7 290 aa3.78□□□□□ -1.8
YBX3-210ENST00000540975 ATXN10Q9UBB4 475 aa3.78□□□□□ -1.8
YBX3-210ENST00000540975 UXTQ9UBK9 157 aaPredicted RBP3.78□□□□□ -1.8
YBX3-210ENST00000540975 PRG4Q92954 1404 aaPredicted RBP3.78□□□□□ -1.8
YBX3-210ENST00000540975 CROCC2H7BZ55 1655 aa3.78□□□□□ -1.81
YBX3-210ENST00000540975 MYOM1P52179 1685 aa3.78□□□□□ -1.81
YBX3-210ENST00000540975 RLFQ13129 1914 aa3.78□□□□□ -1.81
YBX3-210ENST00000540975 MAP3K5Q99683 1374 aa3.77□□□□□ -1.81
YBX3-210ENST00000540975 THSD7BQ9C0I4 1608 aa3.77□□□□□ -1.81
YBX3-210ENST00000540975 EIF4G3O43432 1585 aaKnown RBP3.77□□□□□ -1.81
YBX3-210ENST00000540975 PHLPP2Q6ZVD8 1323 aa3.77□□□□□ -1.81
YBX3-210ENST00000540975 IGHV7-81A0A0B4J1V7 117 aa3.77□□□□□ -1.81
YBX3-210ENST00000540975 GOLGA8QA0A0J9YX86 632 aa3.77□□□□□ -1.81
YBX3-210ENST00000540975 ERICH2A1L162 156 aa3.77□□□□□ -1.81
YBX3-210ENST00000540975 GOLGA8OA6NCC3 632 aa3.77□□□□□ -1.81
YBX3-210ENST00000540975 GOLGA8NF8WBI6 632 aa3.77□□□□□ -1.81
YBX3-210ENST00000540975 ABCD4O14678 606 aa3.77□□□□□ -1.81
YBX3-210ENST00000540975 CLDN3O15551 220 aa3.77□□□□□ -1.81
YBX3-210ENST00000540975 SPAG6O75602 509 aa3.77□□□□□ -1.81
YBX3-210ENST00000540975 OTCP00480 354 aa3.77□□□□□ -1.81
YBX3-210ENST00000540975 IFNA14P01570 189 aa3.77□□□□□ -1.81
YBX3-210ENST00000540975 OPN1LWP04000 364 aa3.77□□□□□ -1.81
YBX3-210ENST00000540975 HMGN1P05114 100 aa3.77□□□□□ -1.81
YBX3-210ENST00000540975 SNRPAP09012 282 aaKnown RBP3.77□□□□□ -1.81
YBX3-210ENST00000540975 ATF6P18850 670 aa3.77□□□□□ -1.81
YBX3-210ENST00000540975 SFNP31947 248 aa3.77□□□□□ -1.81
YBX3-210ENST00000540975 KIR2DS2P43631 304 aa3.77□□□□□ -1.81
YBX3-210ENST00000540975 RAB14P61106 215 aa3.77□□□□□ -1.81
YBX3-210ENST00000540975 SGCAQ16586 387 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms