RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 FAM131AQ6UXB0 335 aa12.55□□□□□ -0.4
RTN3-210ENST00000540798 RABEPKQ7Z6M1 372 aa12.55□□□□□ -0.4
RTN3-210ENST00000540798 SLC35F2Q8IXU6 374 aa12.55□□□□□ -0.4
RTN3-210ENST00000540798 OR8H2Q8N162 312 aa12.55□□□□□ -0.4
RTN3-210ENST00000540798 RPS4Y2Q8TD47 263 aa12.55□□□□□ -0.4
RTN3-210ENST00000540798 DIRAS2Q96HU8 199 aa12.55□□□□□ -0.4
RTN3-210ENST00000540798 GAL3ST4Q96RP7 486 aa12.55□□□□□ -0.4
RTN3-210ENST00000540798 NMNAT3Q96T66 252 aa12.55□□□□□ -0.4
RTN3-210ENST00000540798 DUSP23Q9BVJ7 150 aa12.55□□□□□ -0.4
RTN3-210ENST00000540798 NRSN2Q9GZP1 204 aa12.55□□□□□ -0.4
RTN3-210ENST00000540798 PPP1R3EQ9H7J1 279 aa12.55□□□□□ -0.4
RTN3-210ENST00000540798 COPS7AQ9UBW8 275 aa12.55□□□□□ -0.4
RTN3-210ENST00000540798 CTSFQ9UBX1 484 aa12.55□□□□□ -0.4
RTN3-210ENST00000540798 MKL2Q9ULH7 1088 aa12.55□□□□□ -0.4
RTN3-210ENST00000540798 J3QLW9 94 aa12.54□□□□□ -0.4
RTN3-210ENST00000540798 SSX4O60224 188 aa12.54□□□□□ -0.4
RTN3-210ENST00000540798 HLA-DQB1P01920 261 aa12.54□□□□□ -0.4
RTN3-210ENST00000540798 TDGF1P13385 188 aa12.54□□□□□ -0.4
RTN3-210ENST00000540798 ZNF19P17023 458 aa12.54□□□□□ -0.4
RTN3-210ENST00000540798 IL12BP29460 328 aa12.54□□□□□ -0.4
RTN3-210ENST00000540798 RFX2P48378 723 aa12.54□□□□□ -0.4
RTN3-210ENST00000540798 ERVK-25P63136 954 aa12.54□□□□□ -0.4
RTN3-210ENST00000540798 CCDC58Q4VC31 144 aa12.54□□□□□ -0.4
RTN3-210ENST00000540798 ABHD4Q8TB40 342 aa12.54□□□□□ -0.4
RTN3-210ENST00000540798 ACOT12Q8WYK0 555 aa12.54□□□□□ -0.4
RTN3-210ENST00000540798 RASD2Q96D21 266 aa12.54□□□□□ -0.4
RTN3-210ENST00000540798 OMA1Q96E52 524 aa12.54□□□□□ -0.4
RTN3-210ENST00000540798 SEMA4CQ9C0C4 833 aa12.54□□□□□ -0.4
RTN3-210ENST00000540798 PCDHGB7Q9Y5F8 929 aa12.54□□□□□ -0.4
RTN3-210ENST00000540798 A0A1B0GTQ1 180 aa12.54□□□□□ -0.4
RTN3-210ENST00000540798 FADS1O60427 444 aa12.54□□□□□ -0.4
RTN3-210ENST00000540798 CD14P08571 375 aa12.54□□□□□ -0.4
RTN3-210ENST00000540798 CSF3P09919 207 aa12.54□□□□□ -0.4
RTN3-210ENST00000540798 ABCD3P28288 659 aa12.54□□□□□ -0.4
RTN3-210ENST00000540798 TACR3P29371 465 aa12.54□□□□□ -0.4
RTN3-210ENST00000540798 AQP2P41181 271 aa12.54□□□□□ -0.4
RTN3-210ENST00000540798 NR4A2P43354 598 aa12.54□□□□□ -0.4
RTN3-210ENST00000540798 NR0B1P51843 470 aaKnown RBP12.54□□□□□ -0.4
RTN3-210ENST00000540798 ASAH1Q13510 395 aa12.54□□□□□ -0.4
RTN3-210ENST00000540798 PON3Q15166 354 aa12.54□□□□□ -0.4
RTN3-210ENST00000540798 ARL9Q6T311 187 aa12.54□□□□□ -0.4
RTN3-210ENST00000540798 NLGN4YQ8NFZ3 816 aaPredicted RBP12.54□□□□□ -0.4
RTN3-210ENST00000540798 SAP25Q8TEE9 199 aa12.54□□□□□ -0.4
RTN3-210ENST00000540798 KTI12Q96EK9 354 aaPredicted RBP12.54□□□□□ -0.4
RTN3-210ENST00000540798 KLHL1Q9NR64 748 aa12.54□□□□□ -0.4
RTN3-210ENST00000540798 CPAMD8Q8IZJ3 1885 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 ZSCAN5BA6NJL1 495 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 GLCEO94923 617 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 ONECUT2O95948 504 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 FOSL2P15408 326 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 CDKN2AP42771 156 aaKnown RBP12.53□□□□□ -0.4
RTN3-210ENST00000540798 EVX1P49640 407 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 CCR4P51679 360 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 HCCSP53701 268 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 PMS2CLQ68D20 193 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 LANCL3Q6ZV70 420 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 SLC29A4Q7RTT9 530 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 TPRA1Q86W33 373 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 DEFB123Q8N688 67 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 IL17RDQ8NFM7 739 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 SUN5Q8TC36 379 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 PELI1Q96FA3 418 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 NANSQ9NR45 359 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 A0A1W2PQ09 198 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 CDC40O60508 579 aaKnown RBP eCLIP12.53□□□□□ -0.4
RTN3-210ENST00000540798 HPGDSO60760 199 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 APOA1P02647 267 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 ATXN8OSP0DMR3 200 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 SDHAP31040 664 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 THBS2P35442 1172 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 PLCXD2Q0VAA5 305 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 NR0B2Q15466 257 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 EMC4Q5J8M3 183 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 HLA-DQA1Q5Y7H0 255 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 HBMQ6B0K9 141 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 RPTNQ6XPR3 784 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 MARCH3Q86UD3 253 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 GUCD1Q96NT3 240 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 UBL7Q96S82 380 aaPredicted RBP12.53□□□□□ -0.4
RTN3-210ENST00000540798 LPAR4Q99677 370 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 B3GNT4Q9C0J1 378 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 FKRPQ9H9S5 495 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 TIGARQ9NQ88 270 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 COMMD3Q9UBI1 195 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 PPIEQ9UNP9 301 aaKnown RBP12.53□□□□□ -0.4
RTN3-210ENST00000540798 COPS3Q9UNS2 423 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 A0A0G2JK05 382 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 TEX13CA0A0J9YWL9 993 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 CDC14CA4D256 554 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 BGLAPP02818 100 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 IFITM2Q01629 132 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 HSF2Q03933 536 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 ZNF684Q5T5D7 378 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 SIGIRRQ6IA17 410 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 MZT2AQ6P582 158 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 TSSK4Q6SA08 328 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 WDR5BQ86VZ2 330 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 MS4A15Q8N5U1 240 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 NFAM1Q8NET5 270 aaPredicted RBP12.53□□□□□ -0.4
RTN3-210ENST00000540798 TAAR8Q969N4 342 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 104 ms