RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 LATS1O95835 1130 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 APOC3P02656 99 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 HIST1H2ABP04908 130 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 CFIP05156 583 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 ANXA2P07355 339 aaKnown RBP6.05□□□□□ -1.44
USP28-202ENST00000535607 NMBP08949 121 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 LIMS3P0CW19 117 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 LIMS4P0CW20 117 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 SMIM6P0DI80 62 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 ZNF20P17024 532 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 CXCL3P19876 107 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 RAB3BP20337 219 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 TNFSF4P23510 183 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 KHKP50053 298 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 MVDP53602 400 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 CXADRP78310 365 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 DEFA5Q01523 94 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 CRYZQ08257 329 aaKnown RBP6.05□□□□□ -1.44
USP28-202ENST00000535607 ST3GAL3Q11203 375 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 ILF3Q12906 894 aaKnown RBP eCLIP6.05□□□□□ -1.44
USP28-202ENST00000535607 DOC2AQ14183 400 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 HLXQ14774 488 aaPredicted RBP6.05□□□□□ -1.44
USP28-202ENST00000535607 ZMYND11Q15326 602 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 CHRNA6Q15825 494 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 ST3GAL2Q16842 350 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 SLC5A12Q1EHB4 618 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 NDUFAF6Q330K2 333 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 OR2G6Q5TZ20 316 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 SFRP4Q6FHJ7 346 aaPredicted RBP6.05□□□□□ -1.44
USP28-202ENST00000535607 ELP2Q6IA86 826 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 RPL13AP3Q6NVV1 102 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 PODNL1Q6PEZ8 512 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 HAGHLQ6PII5 290 aaPredicted RBP6.05□□□□□ -1.44
USP28-202ENST00000535607 SMARCD3Q6STE5 483 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 TMIGD1Q6UXZ0 262 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 TMEM184AQ6ZMB5 413 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 GLDNQ6ZMI3 551 aaPredicted RBP6.05□□□□□ -1.44
USP28-202ENST00000535607 TPGS1Q6ZTW0 290 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 TMUB2Q71RG4 321 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 HIST3H2AQ7L7L0 130 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 SKA3Q8IX90 412 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 CPXM2Q8N436 756 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 OR2C3Q8N628 320 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 ACBD7Q8N6N7 88 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 CPEB3Q8NE35 698 aaKnown RBP6.05□□□□□ -1.44
USP28-202ENST00000535607 OR4K5Q8NGD3 323 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 OR4D10Q8NGI6 311 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 CCDC107Q8WV48 283 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 SMIM4Q8WVI0 70 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 CNOT9Q92600 299 aaKnown RBP6.05□□□□□ -1.44
USP28-202ENST00000535607 ATOH1Q92858 354 aaPredicted RBP6.05□□□□□ -1.44
USP28-202ENST00000535607 PMM1Q92871 262 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 EXTL1Q92935 676 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 HIST1H2ACQ93077 130 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 TCEAL3Q969E4 200 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 MARC2Q969Z3 335 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 ORAI1Q96D31 301 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 SNX22Q96L94 193 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 NEU1Q99519 415 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 MTERF1Q99551 399 aaKnown RBP6.05□□□□□ -1.44
USP28-202ENST00000535607 VKORC1Q9BQB6 163 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 SEC22CQ9BRL7 303 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 GINS4Q9BRT9 223 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 FUZQ9BT04 418 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 TM6SF2Q9BZW4 377 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 RSPH9Q9H1X1 276 aaPredicted RBP6.05□□□□□ -1.44
USP28-202ENST00000535607 ZNF334Q9HCZ1 680 aaPredicted RBP6.05□□□□□ -1.44
USP28-202ENST00000535607 IL26Q9NPH9 171 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 TEX10Q9NXF1 929 aaPredicted RBP6.05□□□□□ -1.44
USP28-202ENST00000535607 TAS2R5Q9NYW4 299 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 TAS2R3Q9NYW6 316 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 OR6C2Q9NZP2 312 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 CALML5Q9NZT1 146 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 UPB1Q9UBR1 384 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 FBXL3Q9UKT7 428 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 FBXW2Q9UKT8 454 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 SCML1Q9UN30 329 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 MRPS7Q9Y2R9 242 aaKnown RBP6.05□□□□□ -1.44
USP28-202ENST00000535607 SLC6A5Q9Y345 797 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 CHST2Q9Y4C5 530 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 CHD5Q8TDI0 1954 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 MTCL1Q9Y4B5 1905 aaKnown RBP6.04□□□□□ -1.44
USP28-202ENST00000535607 A0A0D9SEW6 157 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 RAB19A4D1S5 217 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 MCRIP1C9JLW8 97 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 MCIDASD6RGH6 385 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 NEDD8-MDP1E9PL57 170 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 GABARAPH6UMI1 98 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 FLRT2O43155 660 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 GJB3O75712 270 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 KRT33AO76009 404 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 KDM4BO94953 1096 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 OR2A4O95047 310 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 OR5F1O95221 314 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 SNAPINO95295 136 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 OLFM2O95897 454 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 BCHEP06276 602 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 EIF4EP06730 217 aaKnown RBP6.04□□□□□ -1.44
USP28-202ENST00000535607 ADRA2AP08913 450 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 RAB40ALP0C0E4 278 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 115.8 ms