RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 GKN3PP0CG01 181 aa12.37□□□□□ -0.43
CPSF1-201ENST00000526271 PRG2P13727 222 aa12.37□□□□□ -0.43
CPSF1-201ENST00000526271 ITGA2P17301 1181 aa12.37□□□□□ -0.43
CPSF1-201ENST00000526271 SERPINF1P36955 418 aa12.37□□□□□ -0.43
CPSF1-201ENST00000526271 SLC1A3P43003 542 aa12.37□□□□□ -0.43
CPSF1-201ENST00000526271 POLR2HP52434 150 aaKnown RBP12.37□□□□□ -0.43
CPSF1-201ENST00000526271 MVDP53602 400 aa12.37□□□□□ -0.43
CPSF1-201ENST00000526271 EFNB3Q15768 340 aa12.37□□□□□ -0.43
CPSF1-201ENST00000526271 PDCD2Q16342 344 aaPredicted RBP12.37□□□□□ -0.43
CPSF1-201ENST00000526271 MRPL2Q5T653 305 aaKnown RBP12.37□□□□□ -0.43
CPSF1-201ENST00000526271 ANKRD16Q6P6B7 361 aa12.37□□□□□ -0.43
CPSF1-201ENST00000526271 BHLHB9Q6PI77 547 aa12.37□□□□□ -0.43
CPSF1-201ENST00000526271 RNF130Q86XS8 419 aa12.37□□□□□ -0.43
CPSF1-201ENST00000526271 DEPDC4Q8N2C3 294 aa12.37□□□□□ -0.43
CPSF1-201ENST00000526271 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.37□□□□□ -0.43
CPSF1-201ENST00000526271 ZNF317Q96PQ6 595 aaPredicted RBP12.37□□□□□ -0.43
CPSF1-201ENST00000526271 ALKBH3Q96Q83 286 aaPredicted RBP12.37□□□□□ -0.43
CPSF1-201ENST00000526271 PRPF18Q99633 342 aaKnown RBP12.37□□□□□ -0.43
CPSF1-201ENST00000526271 DOK1Q99704 481 aa12.37□□□□□ -0.43
CPSF1-201ENST00000526271 PIMREGQ9BSJ6 248 aa12.37□□□□□ -0.43
CPSF1-201ENST00000526271 EXD2Q9NVH0 621 aa12.37□□□□□ -0.43
CPSF1-201ENST00000526271 NOP53Q9NZM5 478 aaKnown RBP12.37□□□□□ -0.43
CPSF1-201ENST00000526271 SEC14L4Q9UDX3 406 aa12.37□□□□□ -0.43
CPSF1-201ENST00000526271 SPIN1Q9Y657 262 aaPredicted RBP12.37□□□□□ -0.43
CPSF1-201ENST00000526271 TRRAPQ9Y4A5 3859 aa12.37□□□□□ -0.43
CPSF1-201ENST00000526271 A0A096LPE4 126 aa12.36□□□□□ -0.43
CPSF1-201ENST00000526271 A0A1W2PPZ6 126 aa12.36□□□□□ -0.43
CPSF1-201ENST00000526271 FTCDNL1E5RQL4 147 aa12.36□□□□□ -0.43
CPSF1-201ENST00000526271 LYNX1G3V0Z9 82 aa12.36□□□□□ -0.43
CPSF1-201ENST00000526271 POLR3GO15318 223 aaPredicted RBP12.36□□□□□ -0.43
CPSF1-201ENST00000526271 HDAC3O15379 428 aa12.36□□□□□ -0.43
CPSF1-201ENST00000526271 ZNF432O94892 652 aa12.36□□□□□ -0.43
CPSF1-201ENST00000526271 TGDSO95455 350 aa12.36□□□□□ -0.43
CPSF1-201ENST00000526271 LYNX1P0DP58 116 aa12.36□□□□□ -0.43
CPSF1-201ENST00000526271 GIFP27352 417 aa12.36□□□□□ -0.43
CPSF1-201ENST00000526271 OR7A5Q15622 319 aa12.36□□□□□ -0.43
CPSF1-201ENST00000526271 CARTPTQ16568 116 aa12.36□□□□□ -0.43
CPSF1-201ENST00000526271 CREB3L2Q70SY1 520 aa12.36□□□□□ -0.43
CPSF1-201ENST00000526271 AAED1Q7RTV5 226 aa12.36□□□□□ -0.43
CPSF1-201ENST00000526271 SPATA19Q7Z5L4 167 aa12.36□□□□□ -0.43
CPSF1-201ENST00000526271 CARM1Q86X55 608 aa12.36□□□□□ -0.43
CPSF1-201ENST00000526271 TESCQ96BS2 214 aa12.36□□□□□ -0.43
CPSF1-201ENST00000526271 CCDC115Q96NT0 180 aa12.36□□□□□ -0.43
CPSF1-201ENST00000526271 VRK1Q99986 396 aaPredicted RBP12.36□□□□□ -0.43
CPSF1-201ENST00000526271 SLC35A5Q9BS91 424 aa12.36□□□□□ -0.43
CPSF1-201ENST00000526271 NOX3Q9HBY0 568 aa12.36□□□□□ -0.43
CPSF1-201ENST00000526271 MARCOQ9UEW3 520 aaPredicted RBP12.36□□□□□ -0.43
CPSF1-201ENST00000526271 ARPC4-TTLL3A0A0A6YYG9 625 aa12.35□□□□□ -0.43
CPSF1-201ENST00000526271 HAX1O00165 279 aa12.35□□□□□ -0.43
CPSF1-201ENST00000526271 FRS3O43559 492 aa12.35□□□□□ -0.43
CPSF1-201ENST00000526271 EIF1BO60739 113 aaKnown RBP12.35□□□□□ -0.43
CPSF1-201ENST00000526271 VENTXO95231 258 aa12.35□□□□□ -0.43
CPSF1-201ENST00000526271 IGKV3-15P01624 115 aa12.35□□□□□ -0.43
CPSF1-201ENST00000526271 PGRP06401 933 aa12.35□□□□□ -0.43
CPSF1-201ENST00000526271 KITP10721 976 aa12.35□□□□□ -0.43
CPSF1-201ENST00000526271 THBS4P35443 961 aa12.35□□□□□ -0.43
CPSF1-201ENST00000526271 KHKP50053 298 aa12.35□□□□□ -0.43
CPSF1-201ENST00000526271 EGR4Q05215 589 aa12.35□□□□□ -0.43
CPSF1-201ENST00000526271 RIN1Q13671 783 aa12.35□□□□□ -0.43
CPSF1-201ENST00000526271 SMU1Q2TAY7 513 aa12.35□□□□□ -0.43
CPSF1-201ENST00000526271 GPAT3Q53EU6 434 aa12.35□□□□□ -0.43
CPSF1-201ENST00000526271 VHLLQ6RSH7 139 aa12.35□□□□□ -0.43
CPSF1-201ENST00000526271 ZNF836Q6ZNA1 936 aa12.35□□□□□ -0.43
CPSF1-201ENST00000526271 LRRC74BQ6ZQY2 392 aa12.35□□□□□ -0.43
CPSF1-201ENST00000526271 MEX3DQ86XN8 651 aaKnown RBP12.35□□□□□ -0.43
CPSF1-201ENST00000526271 VRK2Q86Y07 508 aa12.35□□□□□ -0.43
CPSF1-201ENST00000526271 CDK20Q8IZL9 346 aa12.35□□□□□ -0.43
CPSF1-201ENST00000526271 KDM8Q8N371 416 aa12.35□□□□□ -0.43
CPSF1-201ENST00000526271 CLIP4Q8N3C7 705 aa12.35□□□□□ -0.43
CPSF1-201ENST00000526271 TRNT1Q96Q11 434 aaKnown RBP12.35□□□□□ -0.43
CPSF1-201ENST00000526271 KATNB1Q9BVA0 655 aa12.35□□□□□ -0.43
CPSF1-201ENST00000526271 PTDSS2Q9BVG9 487 aa12.35□□□□□ -0.43
CPSF1-201ENST00000526271 SF3B5Q9BWJ5 86 aaKnown RBP12.35□□□□□ -0.43
CPSF1-201ENST00000526271 DPY30Q9C005 99 aa12.35□□□□□ -0.43
CPSF1-201ENST00000526271 MEAF6Q9HAF1 191 aa12.35□□□□□ -0.43
CPSF1-201ENST00000526271 PARPBPQ9NWS1 579 aa12.35□□□□□ -0.43
CPSF1-201ENST00000526271 B3GAT1Q9P2W7 334 aa12.35□□□□□ -0.43
CPSF1-201ENST00000526271 USH1CQ9Y6N9 552 aa12.35□□□□□ -0.43
CPSF1-201ENST00000526271 DSPPQ9NZW4 1301 aa12.35□□□□□ -0.43
CPSF1-201ENST00000526271 CDHR4A6H8M9 788 aa12.34□□□□□ -0.43
CPSF1-201ENST00000526271 B9A039 149 aa12.34□□□□□ -0.43
CPSF1-201ENST00000526271 WNT9BO14905 357 aa12.34□□□□□ -0.43
CPSF1-201ENST00000526271 FZD7O75084 574 aa12.34□□□□□ -0.43
CPSF1-201ENST00000526271 PDE5AO76074 875 aa12.34□□□□□ -0.43
CPSF1-201ENST00000526271 GSNP06396 782 aa12.34□□□□□ -0.43
CPSF1-201ENST00000526271 FKBP2P26885 142 aaKnown RBP12.34□□□□□ -0.43
CPSF1-201ENST00000526271 PPOXP50336 477 aa12.34□□□□□ -0.43
CPSF1-201ENST00000526271 IDH3GP51553 393 aaPredicted RBP12.34□□□□□ -0.43
CPSF1-201ENST00000526271 UFM1P61960 85 aa12.34□□□□□ -0.43
CPSF1-201ENST00000526271 SNRPD2P62316 118 aaKnown RBP12.34□□□□□ -0.43
CPSF1-201ENST00000526271 FAM174BQ3ZCQ3 159 aa12.34□□□□□ -0.43
CPSF1-201ENST00000526271 PHYHD1Q5SRE7 291 aa12.34□□□□□ -0.43
CPSF1-201ENST00000526271 ATAD3BQ5T9A4 648 aa12.34□□□□□ -0.43
CPSF1-201ENST00000526271 EPGNQ6UW88 154 aa12.34□□□□□ -0.43
CPSF1-201ENST00000526271 SLC46A3Q7Z3Q1 461 aa12.34□□□□□ -0.43
CPSF1-201ENST00000526271 MAVSQ7Z434 540 aa12.34□□□□□ -0.43
CPSF1-201ENST00000526271 COMTD1Q86VU5 262 aa12.34□□□□□ -0.43
CPSF1-201ENST00000526271 CMIPQ8IY22 773 aa12.34□□□□□ -0.43
CPSF1-201ENST00000526271 LRRC34Q8IZ02 419 aa12.34□□□□□ -0.43
CPSF1-201ENST00000526271 SVOPLQ8N434 492 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms