RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 PDPK2PQ6A1A2 396 aa3.85□□□□□ -1.79
SF3B1-212ENST00000496458 CENPUQ71F23 418 aa3.85□□□□□ -1.79
SF3B1-212ENST00000496458 ERO1BQ86YB8 467 aa3.85□□□□□ -1.79
SF3B1-212ENST00000496458 COLGALT1Q8NBJ5 622 aa3.85□□□□□ -1.79
SF3B1-212ENST00000496458 RAET1EQ8TD07 263 aa3.85□□□□□ -1.79
SF3B1-212ENST00000496458 SPRYD4Q8WW59 207 aaPredicted RBP3.85□□□□□ -1.79
SF3B1-212ENST00000496458 TMEM45BQ96B21 275 aa3.85□□□□□ -1.79
SF3B1-212ENST00000496458 ALS2CR12Q96Q35 445 aa3.85□□□□□ -1.79
SF3B1-212ENST00000496458 KIR2DL4Q99706 377 aa3.85□□□□□ -1.79
SF3B1-212ENST00000496458 CHRDL1Q9BU40 450 aa3.85□□□□□ -1.79
SF3B1-212ENST00000496458 DNTTIP1Q9H147 329 aa3.85□□□□□ -1.79
SF3B1-212ENST00000496458 TMEM185BQ9H7F4 350 aa3.85□□□□□ -1.79
SF3B1-212ENST00000496458 LZTFL1Q9NQ48 299 aa3.85□□□□□ -1.79
SF3B1-212ENST00000496458 ERVK-18Q9QC07 812 aa3.85□□□□□ -1.79
SF3B1-212ENST00000496458 SEC14L3Q9UDX4 400 aa3.85□□□□□ -1.79
SF3B1-212ENST00000496458 ZNF490Q9ULM2 529 aaPredicted RBP3.85□□□□□ -1.79
SF3B1-212ENST00000496458 C15orf41Q9Y2V0 281 aa3.85□□□□□ -1.79
SF3B1-212ENST00000496458 CPDO75976 1380 aa3.85□□□□□ -1.79
SF3B1-212ENST00000496458 CCDC7Q96M83 1385 aa3.85□□□□□ -1.79
SF3B1-212ENST00000496458 ATRNO75882 1429 aa3.85□□□□□ -1.79
SF3B1-212ENST00000496458 SLIT2O94813 1529 aa3.85□□□□□ -1.79
SF3B1-212ENST00000496458 NRKQ7Z2Y5 1582 aa3.85□□□□□ -1.79
SF3B1-212ENST00000496458 MYOM1P52179 1685 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 CAMTA1Q9Y6Y1 1673 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 NWD2Q9ULI1 1742 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 LTN1O94822 1766 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 KIF20BQ96Q89 1820 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 TTC26A0AVF1 554 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 NPIPA2E9PIF3 369 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 EI24O14681 340 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 TRDMT1O14717 391 aaKnown RBP3.84□□□□□ -1.79
SF3B1-212ENST00000496458 ARPC1BO15143 372 aaKnown RBP3.84□□□□□ -1.79
SF3B1-212ENST00000496458 RNF13O43567 381 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 TYROBPO43914 113 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 NDUFA7O95182 113 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 S100A6P06703 90 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 HIST1H2AGP0C0S8 130 aaPredicted RBP3.84□□□□□ -1.79
SF3B1-212ENST00000496458 TROVE2P10155 538 aaKnown RBP eCLIP3.84□□□□□ -1.79
SF3B1-212ENST00000496458 UQCRC2P22695 453 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 CDH4P55283 916 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 MAP3K7CLP57077 242 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 ELAVL3Q14576 367 aaKnown RBP3.84□□□□□ -1.79
SF3B1-212ENST00000496458 ZNF528Q3MIS6 628 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 LIPKQ5VXJ0 399 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 TMEM225Q6GV28 225 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 ERICH1Q86X53 443 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 HIST2H2ABQ8IUE6 130 aaPredicted RBP3.84□□□□□ -1.79
SF3B1-212ENST00000496458 CCDC36Q8IYA8 594 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 GPR65Q8IYL9 337 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 FAM9CQ8IZT9 166 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 CEND1Q8N111 149 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 PYROXD2Q8N2H3 581 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 MITD1Q8WV92 249 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 OR1E3Q8WZA6 343 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 PIGCQ92535 297 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 HIST1H2ACQ93077 130 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 FAM122AQ96E09 287 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 MSANTD3Q96H12 275 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 ARL5BQ96KC2 179 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 SH3GL1Q99961 368 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 CITED1Q99966 193 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 OMDQ99983 421 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 TSGA10Q9BZW7 698 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 SYNDIG1Q9H7V2 258 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 CYP3A43Q9HB55 503 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 UBAP1Q9NZ09 502 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 TMEM9Q9P0T7 183 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 DPM3Q9P2X0 92 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 SLC2A6Q9UGQ3 507 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 CDH9Q9ULB4 789 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 CA5BQ9Y2D0 317 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 CCDC171Q6TFL3 1326 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 OVOS2A0A0J9YW53 1432 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 OVOS2Q6IE36 1432 aa3.84□□□□□ -1.79
SF3B1-212ENST00000496458 COL18A1P39060 1754 aa3.84□□□□□ -1.8
SF3B1-212ENST00000496458 BRWD3Q6RI45 1802 aa3.84□□□□□ -1.8
SF3B1-212ENST00000496458 NPIPA5A0A0B4J1W7 369 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 TRAV25A0A0B4J276 109 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 WI2-2373I1.2A0A1W2PRP0 233 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 ERICH2A1L162 156 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 METTL21EPA6NDL7 271 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 OR2AG2A6NM03 316 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 GABRR3A8MPY1 467 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 NPIPA5E9PKD4 350 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 CLDN5O00501 218 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 OR1F1O43749 312 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 UPK3AO75631 287 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 CPN1P15169 458 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 NT5EP21589 574 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 MSR1P21757 451 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 IGFBP5P24593 272 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 NMT1P30419 496 aaKnown RBP3.83□□□□□ -1.8
SF3B1-212ENST00000496458 MAT2AP31153 395 aaKnown RBP3.83□□□□□ -1.8
SF3B1-212ENST00000496458 RANBP1P43487 201 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 OR1D4P47884 311 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 CTAG1AP78358 180 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 PJVKQ0ZLH3 352 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 DYNC1I2Q13409 638 aaKnown RBP3.83□□□□□ -1.8
SF3B1-212ENST00000496458 BTG3Q14201 252 aaPredicted RBP3.83□□□□□ -1.8
SF3B1-212ENST00000496458 CHRNA6Q15825 494 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms