RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 FADS1O60427 444 aa19.19■□□□□ 0.66
CCDC88B-208ENST00000492980 SELENOFO60613 162 aa19.19■□□□□ 0.66
CCDC88B-208ENST00000492980 SERPINI2O75830 405 aa19.19■□□□□ 0.66
CCDC88B-208ENST00000492980 ACVR1BP36896 505 aa19.19■□□□□ 0.66
CCDC88B-208ENST00000492980 CTXN1P60606 82 aa19.19■□□□□ 0.66
CCDC88B-208ENST00000492980 ACTA2P62736 377 aa19.19■□□□□ 0.66
CCDC88B-208ENST00000492980 ACTG2P63267 376 aa19.19■□□□□ 0.66
CCDC88B-208ENST00000492980 RNF4P78317 190 aa19.19■□□□□ 0.66
CCDC88B-208ENST00000492980 CDONQ4KMG0 1287 aa19.19■□□□□ 0.66
CCDC88B-208ENST00000492980 ANKRD37Q7Z713 158 aa19.19■□□□□ 0.66
CCDC88B-208ENST00000492980 NR2C2APQ86WQ0 139 aa19.19■□□□□ 0.66
CCDC88B-208ENST00000492980 SYS1Q8N2H4 156 aa19.19■□□□□ 0.66
CCDC88B-208ENST00000492980 LSM14AQ8ND56 463 aaKnown RBP19.19■□□□□ 0.66
CCDC88B-208ENST00000492980 ABHD4Q8TB40 342 aa19.19■□□□□ 0.66
CCDC88B-208ENST00000492980 SETD6Q8TBK2 473 aa19.19■□□□□ 0.66
CCDC88B-208ENST00000492980 PCDHGB7Q9Y5F8 929 aa19.19■□□□□ 0.66
CCDC88B-208ENST00000492980 MAGEB4O15481 346 aaPredicted RBP19.19■□□□□ 0.66
CCDC88B-208ENST00000492980 SSX4O60224 188 aa19.19■□□□□ 0.66
CCDC88B-208ENST00000492980 CDC40O60508 579 aaKnown RBP eCLIP19.19■□□□□ 0.66
CCDC88B-208ENST00000492980 SC5DO75845 299 aa19.19■□□□□ 0.66
CCDC88B-208ENST00000492980 CFL1P23528 166 aaKnown RBP19.19■□□□□ 0.66
CCDC88B-208ENST00000492980 EVI2BP34910 448 aa19.19■□□□□ 0.66
CCDC88B-208ENST00000492980 NRG3P56975 720 aa19.19■□□□□ 0.66
CCDC88B-208ENST00000492980 RPL18Q07020 188 aaKnown RBP19.19■□□□□ 0.66
CCDC88B-208ENST00000492980 CD300CQ08708 224 aa19.19■□□□□ 0.66
CCDC88B-208ENST00000492980 PWWP2BQ6NUJ5 590 aa19.19■□□□□ 0.66
CCDC88B-208ENST00000492980 CCBE1Q6UXH8 406 aaPredicted RBP19.19■□□□□ 0.66
CCDC88B-208ENST00000492980 OR6K6Q8NGW6 343 aa19.19■□□□□ 0.66
CCDC88B-208ENST00000492980 MAFAQ8NHW3 353 aaPredicted RBP19.19■□□□□ 0.66
CCDC88B-208ENST00000492980 PIGKQ92643 395 aa19.19■□□□□ 0.66
CCDC88B-208ENST00000492980 PELI1Q96FA3 418 aa19.19■□□□□ 0.66
CCDC88B-208ENST00000492980 SEMA4CQ9C0C4 833 aa19.19■□□□□ 0.66
CCDC88B-208ENST00000492980 PRMT8Q9NR22 394 aaPredicted RBP19.19■□□□□ 0.66
CCDC88B-208ENST00000492980 COPS3Q9UNS2 423 aa19.19■□□□□ 0.66
CCDC88B-208ENST00000492980 VCANP13611 3396 aa19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 IDSB3KWA1 339 aa19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 SCO2O43819 266 aa19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 HPGDSO60760 199 aa19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 SCRG1O75711 98 aa19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 GLCEO94923 617 aa19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 TXNDC12O95881 172 aa19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 APOA1P02647 267 aa19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 PGCP20142 388 aa19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 CXCR1P25024 350 aa19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 SDHAP31040 664 aa19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 RPS5P46782 204 aaKnown RBP19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 SLC25A1P53007 311 aa19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 FAM27D1Q5T7N8 215 aa19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 LINC01590Q5TEZ4 76 aa19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 NANOGNBQ7Z5D8 188 aa19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 JAZF1Q86VZ6 243 aa19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 EXD3Q8N9H8 876 aa19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 NFAM1Q8NET5 270 aaPredicted RBP19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 KIAA1143Q96AT1 154 aaPredicted RBP19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 CCDC74BQ96LY2 380 aa19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 SYNDIG1Q9H7V2 258 aa19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 FKRPQ9H9S5 495 aa19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 OGG1O15527 345 aa19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 WISP1O95388 367 aa19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 NUDT14O95848 222 aa19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 F13BP05160 661 aa19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 HEXBP07686 556 aa19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 SHC1P29353 583 aa19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 CBFBQ13951 182 aa19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 LYPD4Q6UWN0 246 aa19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 CEACAM19Q7Z692 300 aa19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 PXKQ7Z7A4 578 aa19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 GDPD1Q8N9F7 314 aa19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 APCDD1LQ8NCL9 501 aa19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 GHSRQ92847 366 aa19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 RPRD1BQ9NQG5 326 aaKnown RBP19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 NCDNQ9UBB6 729 aa19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 RARRES3Q9UL19 164 aa19.18■□□□□ 0.66
CCDC88B-208ENST00000492980 A0A1W2PQ09 198 aa19.17■□□□□ 0.66
CCDC88B-208ENST00000492980 OR6C70A6NIJ9 312 aa19.17■□□□□ 0.66
CCDC88B-208ENST00000492980 ADAM10O14672 748 aa19.17■□□□□ 0.66
CCDC88B-208ENST00000492980 BGLAPP02818 100 aa19.17■□□□□ 0.66
CCDC88B-208ENST00000492980 GP1BBP13224 206 aa19.17■□□□□ 0.66
CCDC88B-208ENST00000492980 MZT2AQ6P582 158 aa19.17■□□□□ 0.66
CCDC88B-208ENST00000492980 CNIH2Q6PI25 160 aa19.17■□□□□ 0.66
CCDC88B-208ENST00000492980 POMZP3Q6PJE2 187 aa19.17■□□□□ 0.66
CCDC88B-208ENST00000492980 TP53INP1Q96A56 240 aa19.17■□□□□ 0.66
CCDC88B-208ENST00000492980 SOSTQ9BQB4 213 aa19.17■□□□□ 0.66
CCDC88B-208ENST00000492980 ALG12Q9BV10 488 aa19.17■□□□□ 0.66
CCDC88B-208ENST00000492980 CCDC86Q9H6F5 360 aaKnown RBP19.17■□□□□ 0.66
CCDC88B-208ENST00000492980 WDR70Q9NW82 654 aa19.17■□□□□ 0.66
CCDC88B-208ENST00000492980 ADAMTS9Q9P2N4 1935 aa19.17■□□□□ 0.66
CCDC88B-208ENST00000492980 TMCC2O75069 709 aa19.16■□□□□ 0.66
CCDC88B-208ENST00000492980 P2RX1P51575 399 aa19.16■□□□□ 0.66
CCDC88B-208ENST00000492980 GBX2P52951 348 aaPredicted RBP19.16■□□□□ 0.66
CCDC88B-208ENST00000492980 CDK5R1Q15078 307 aa19.16■□□□□ 0.66
CCDC88B-208ENST00000492980 C16orf47Q6ZP98 133 aaPredicted RBP19.16■□□□□ 0.66
CCDC88B-208ENST00000492980 EID2Q8N6I1 236 aa19.16■□□□□ 0.66
CCDC88B-208ENST00000492980 SNX33Q8WV41 574 aa19.16■□□□□ 0.66
CCDC88B-208ENST00000492980 TSPAN32Q96QS1 320 aa19.16■□□□□ 0.66
CCDC88B-208ENST00000492980 PCDHGB2Q9Y5G2 931 aa19.16■□□□□ 0.66
CCDC88B-208ENST00000492980 TRAV36DV7A0A075B6V5 113 aa19.16■□□□□ 0.66
CCDC88B-208ENST00000492980 FAM171A2A8MVW0 826 aa19.16■□□□□ 0.66
CCDC88B-208ENST00000492980 ALOX12BO75342 701 aa19.16■□□□□ 0.66
CCDC88B-208ENST00000492980 CSF3P09919 207 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms