RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 SLC35F1Q5T1Q4 408 aa12.84□□□□□ -0.35
CUX1-209ENST00000487284 AGAP7PQ5VUJ5 663 aa12.84□□□□□ -0.35
CUX1-209ENST00000487284 NIPAL3Q6P499 406 aa12.84□□□□□ -0.35
CUX1-209ENST00000487284 INO80CQ6PI98 192 aaPredicted RBP12.84□□□□□ -0.35
CUX1-209ENST00000487284 C5orf46Q6UWT4 87 aa12.84□□□□□ -0.35
CUX1-209ENST00000487284 DPY19L2P2Q6ZN68 376 aa12.84□□□□□ -0.35
CUX1-209ENST00000487284 ADGRG3Q86Y34 549 aa12.84□□□□□ -0.35
CUX1-209ENST00000487284 BBS1Q8NFJ9 593 aa12.84□□□□□ -0.35
CUX1-209ENST00000487284 FDCSPQ8NFU4 85 aa12.84□□□□□ -0.35
CUX1-209ENST00000487284 NTNG2Q96CW9 530 aa12.84□□□□□ -0.35
CUX1-209ENST00000487284 FRMD6Q96NE9 622 aa12.84□□□□□ -0.35
CUX1-209ENST00000487284 AGAP4Q96P64 663 aa12.84□□□□□ -0.35
CUX1-209ENST00000487284 BCL7BQ9BQE9 202 aa12.84□□□□□ -0.35
CUX1-209ENST00000487284 FKRPQ9H9S5 495 aa12.84□□□□□ -0.35
CUX1-209ENST00000487284 NANSQ9NR45 359 aa12.84□□□□□ -0.35
CUX1-209ENST00000487284 HPF1Q9NWY4 346 aa12.84□□□□□ -0.35
CUX1-209ENST00000487284 PPP4R1LQ9P1A2 415 aa12.84□□□□□ -0.35
CUX1-209ENST00000487284 ZNF229Q9UJW7 825 aa12.84□□□□□ -0.35
CUX1-209ENST00000487284 LSM2Q9Y333 95 aaKnown RBP12.84□□□□□ -0.35
CUX1-209ENST00000487284 TRAV36DV7A0A075B6V5 113 aa12.83□□□□□ -0.36
CUX1-209ENST00000487284 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.83□□□□□ -0.36
CUX1-209ENST00000487284 C2orf72A6NCS6 295 aa12.83□□□□□ -0.36
CUX1-209ENST00000487284 SUSD5O60279 629 aa12.83□□□□□ -0.36
CUX1-209ENST00000487284 GABARAPO95166 117 aa12.83□□□□□ -0.36
CUX1-209ENST00000487284 IFNGP01579 166 aa12.83□□□□□ -0.36
CUX1-209ENST00000487284 BGLAPP02818 100 aa12.83□□□□□ -0.36
CUX1-209ENST00000487284 ZNF3P17036 446 aa12.83□□□□□ -0.36
CUX1-209ENST00000487284 HK1P19367 917 aa12.83□□□□□ -0.36
CUX1-209ENST00000487284 OC90Q02509 493 aaPredicted RBP12.83□□□□□ -0.36
CUX1-209ENST00000487284 TIGD6Q17RP2 521 aa12.83□□□□□ -0.36
CUX1-209ENST00000487284 SLC25A53Q5H9E4 307 aa12.83□□□□□ -0.36
CUX1-209ENST00000487284 OR5M10Q6IEU7 315 aa12.83□□□□□ -0.36
CUX1-209ENST00000487284 PLBD1Q6P4A8 553 aa12.83□□□□□ -0.36
CUX1-209ENST00000487284 ZNF227Q86WZ6 799 aa12.83□□□□□ -0.36
CUX1-209ENST00000487284 ERI1Q8IV48 349 aaKnown RBP12.83□□□□□ -0.36
CUX1-209ENST00000487284 C10orf53Q8N6V4 93 aa12.83□□□□□ -0.36
CUX1-209ENST00000487284 LRRC75AQ8NAA5 344 aa12.83□□□□□ -0.36
CUX1-209ENST00000487284 STK35Q8TDR2 534 aa12.83□□□□□ -0.36
CUX1-209ENST00000487284 TAAR8Q969N4 342 aa12.83□□□□□ -0.36
CUX1-209ENST00000487284 ERMAPQ96PL5 475 aaPredicted RBP12.83□□□□□ -0.36
CUX1-209ENST00000487284 NRIP3Q9NQ35 241 aa12.83□□□□□ -0.36
CUX1-209ENST00000487284 MED11Q9P086 117 aa12.83□□□□□ -0.36
CUX1-209ENST00000487284 DSPP15924 2871 aaKnown RBP12.83□□□□□ -0.36
CUX1-209ENST00000487284 KIAA1549Q9HCM3 1950 aa12.83□□□□□ -0.36
CUX1-209ENST00000487284 CACNA1GO43497 2377 aa12.83□□□□□ -0.36
CUX1-209ENST00000487284 A0A087WV48 116 aa12.82□□□□□ -0.36
CUX1-209ENST00000487284 TMEM72A0PK05 275 aa12.82□□□□□ -0.36
CUX1-209ENST00000487284 ZC3H12DA2A288 527 aaKnown RBP12.82□□□□□ -0.36
CUX1-209ENST00000487284 FAM183AA6NL82 134 aa12.82□□□□□ -0.36
CUX1-209ENST00000487284 A8MVM7 634 aa12.82□□□□□ -0.36
CUX1-209ENST00000487284 PRR23D1E9PI22 279 aaPredicted RBP12.82□□□□□ -0.36
CUX1-209ENST00000487284 M0R3G1 203 aa12.82□□□□□ -0.36
CUX1-209ENST00000487284 IDH3BO43837 385 aa12.82□□□□□ -0.36
CUX1-209ENST00000487284 SLC25A12O75746 678 aa12.82□□□□□ -0.36
CUX1-209ENST00000487284 ATE1O95260 518 aa12.82□□□□□ -0.36
CUX1-209ENST00000487284 WDPCPO95876 746 aa12.82□□□□□ -0.36
CUX1-209ENST00000487284 MT-ATP6P00846 226 aa12.82□□□□□ -0.36
CUX1-209ENST00000487284 PRR23D2P0DMB1 279 aaPredicted RBP12.82□□□□□ -0.36
CUX1-209ENST00000487284 CCL3P10147 92 aa12.82□□□□□ -0.36
CUX1-209ENST00000487284 APEHP13798 732 aaKnown RBP12.82□□□□□ -0.36
CUX1-209ENST00000487284 CCNA2P20248 432 aa12.82□□□□□ -0.36
CUX1-209ENST00000487284 RPS5P46782 204 aaKnown RBP12.82□□□□□ -0.36
CUX1-209ENST00000487284 CYB561P49447 251 aa12.82□□□□□ -0.36
CUX1-209ENST00000487284 TMPRSS3P57727 454 aa12.82□□□□□ -0.36
CUX1-209ENST00000487284 ITGADQ13349 1161 aa12.82□□□□□ -0.36
CUX1-209ENST00000487284 TMED1Q13445 227 aa12.82□□□□□ -0.36
CUX1-209ENST00000487284 CRMP1Q14194 572 aa12.82□□□□□ -0.36
CUX1-209ENST00000487284 GXYLT1Q4G148 440 aa12.82□□□□□ -0.36
CUX1-209ENST00000487284 ARMC4Q5T2S8 1044 aa12.82□□□□□ -0.36
CUX1-209ENST00000487284 PRAMEF20Q5VT98 475 aa12.82□□□□□ -0.36
CUX1-209ENST00000487284 TUBA3EQ6PEY2 450 aa12.82□□□□□ -0.36
CUX1-209ENST00000487284 POMZP3Q6PJE2 187 aa12.82□□□□□ -0.36
CUX1-209ENST00000487284 MDGA2Q7Z553 956 aa12.82□□□□□ -0.36
CUX1-209ENST00000487284 IGFN1Q86VF2 1251 aa12.82□□□□□ -0.36
CUX1-209ENST00000487284 P2RY8Q86VZ1 359 aa12.82□□□□□ -0.36
CUX1-209ENST00000487284 NANOGP1Q8N7R0 232 aa12.82□□□□□ -0.36
CUX1-209ENST00000487284 PROKR2Q8NFJ6 384 aa12.82□□□□□ -0.36
CUX1-209ENST00000487284 MOSPD2Q8NHP6 518 aa12.82□□□□□ -0.36
CUX1-209ENST00000487284 OR5M11Q96RB7 305 aa12.82□□□□□ -0.36
CUX1-209ENST00000487284 PTDSS2Q9BVG9 487 aa12.82□□□□□ -0.36
CUX1-209ENST00000487284 MND1Q9BWT6 205 aa12.82□□□□□ -0.36
CUX1-209ENST00000487284 HCAR1Q9BXC0 346 aa12.82□□□□□ -0.36
CUX1-209ENST00000487284 SH2D2AQ9NP31 389 aa12.82□□□□□ -0.36
CUX1-209ENST00000487284 PLA2G3Q9NZ20 509 aa12.82□□□□□ -0.36
CUX1-209ENST00000487284 H2AFY2Q9P0M6 372 aaPredicted RBP12.82□□□□□ -0.36
CUX1-209ENST00000487284 ABI3Q9P2A4 366 aa12.82□□□□□ -0.36
CUX1-209ENST00000487284 KLHL21Q9UJP4 597 aa12.82□□□□□ -0.36
CUX1-209ENST00000487284 EXOGQ9Y2C4 368 aaKnown RBP12.82□□□□□ -0.36
CUX1-209ENST00000487284 SLC6A5Q9Y345 797 aa12.82□□□□□ -0.36
CUX1-209ENST00000487284 CEACAM4O75871 244 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 SLC2A5P22732 501 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 NOS3P29474 1203 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 RPL4P36578 427 aaKnown RBP12.81□□□□□ -0.36
CUX1-209ENST00000487284 LIPAP38571 399 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 CD96P40200 585 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 APOBEC1P41238 236 aaKnown RBP12.81□□□□□ -0.36
CUX1-209ENST00000487284 UCNP55089 124 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 SH3BGRP55822 239 aaPredicted RBP12.81□□□□□ -0.36
CUX1-209ENST00000487284 MFAP5Q13361 173 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 CTF1Q16619 201 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms