RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 LOXP28300 417 aaPredicted RBP6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 HOXC12P31275 282 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 RYKP34925 604 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 CRATP43155 626 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 HTR3AP46098 478 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 IDH2P48735 452 aaKnown RBP6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 CLK1P49759 484 aaKnown RBP6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 DIO1P49895 249 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 POLR2JP52435 117 aaKnown RBP6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 NANOS3P60323 173 aaKnown RBP6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 STX1BP61266 288 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 NKX6-1P78426 367 aaPredicted RBP6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 RASGEF1BQ0VAM2 473 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 ITGADQ13349 1161 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 P2RY6Q15077 328 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 AGBL2Q5U5Z8 902 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 SHEQ5VZ18 495 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 ABLIM2Q6H8Q1 611 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 LRRC74BQ6ZQY2 392 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 TMPPEQ6ZT21 453 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 MAVSQ7Z434 540 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 HMGN2P46Q86SG4 172 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 MTDHQ86UE4 582 aaKnown RBP6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 PEX5LQ8IYB4 626 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 ZNF440Q8IYI8 595 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 GABRG1Q8N1C3 465 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 MIER2Q8N344 545 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 NUDT10Q8NFP7 164 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 PNPT1Q8TCS8 783 aaKnown RBP6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 WDR60Q8WVS4 1066 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 ZNF75CPQ92670 426 aaPredicted RBP6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 S100PBPQ96BU1 408 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 ZG16BQ96DA0 208 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 NUDT11Q96G61 164 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 ITCHQ96J02 903 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 C7orf26Q96N11 449 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 ZNF300Q96RE9 604 aaPredicted RBP6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 SLC38A1Q9H2H9 487 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 MTHFD2LQ9H903 347 aaPredicted RBP6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 CTPS2Q9NRF8 586 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 THUMPD1Q9NXG2 353 aaKnown RBP6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 CALML5Q9NZT1 146 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 EMC3Q9P0I2 261 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 HDGFL3Q9Y3E1 203 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 USH1CQ9Y6N9 552 aa6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 ZNF469Q96JG9 3925 aaPredicted RBP6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 HEATR1Q9H583 2144 aaKnown RBP6.02□□□□□ -1.45
CCDC88A-213ENST00000476903 ACANP16112 2415 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 FLNAP21333 2647 aaKnown RBP6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 FAM234BA2RU67 622 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 TMEM247A6NEH6 219 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 CFAP73A6NFT4 308 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 ZNF814B7Z6K7 855 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 FAAHO00519 579 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 ARHGEF9O43307 516 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 ZNF208O43345 1280 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 DNPH1O43598 174 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 TGDSO95455 350 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 BCHEP06276 602 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 OR3A2P47893 321 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 POLR2HP52434 150 aaKnown RBP6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 MAP2K6P52564 334 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 CRISP3P54108 245 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 DSTNP60981 165 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 EPS8Q12929 822 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 PDK3Q15120 406 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 LIN52Q52LA3 116 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 C6orf10Q5SRN2 563 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 MRPL2Q5T653 305 aaKnown RBP6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 EPGNQ6UW88 154 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 ZNF704Q6ZNC4 412 aaPredicted RBP6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 Q6ZT83 130 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 GALNT5Q7Z7M9 940 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 ADGRG3Q86Y34 549 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 P3H2Q8IVL5 708 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 ZNF100Q8IYN0 542 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 LRRC75A-AS1Q8N1F1 130 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 WFDC11Q8NEX6 87 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 PIGXQ8TBF5 258 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 LRRC8CQ8TDW0 803 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 HSD17B8Q92506 261 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 CNOT9Q92600 299 aaKnown RBP6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 DDIT4LQ96D03 193 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 ATP6V1G3Q96LB4 118 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 OR52B2Q96RD2 323 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 POTEKPQ9BYX7 375 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 ARMC7Q9H6L4 198 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 TPT1P8Q9HAU6 139 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 CACYBPQ9HB71 228 aaKnown RBP6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 NGBQ9NPG2 151 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 DLL4Q9NR61 685 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 SLC6A13Q9NSD5 602 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 PRDM4Q9UKN5 801 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 CADP27708 2225 aa6.01□□□□□ -1.45
CCDC88A-213ENST00000476903 DSPPQ9NZW4 1301 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 IGKV3D-15A0A087WSY6 115 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 TMED7-TICAM2A0A0A6YYA0 188 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 TCRBV5S2A0A599 114 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 CDHR4A6H8M9 788 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 AP3D1O14617 1153 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms