RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 GPR65Q8IYL9 337 aa3.47□□□□□ -1.85
VPS13D-207ENST00000476169 ST13P4Q8IZP2 240 aaPredicted RBP3.47□□□□□ -1.85
VPS13D-207ENST00000476169 JAGN1Q8N5M9 183 aa3.47□□□□□ -1.85
VPS13D-207ENST00000476169 ACOT4Q8N9L9 421 aa3.47□□□□□ -1.85
VPS13D-207ENST00000476169 TTC29Q8NA56 475 aaPredicted RBP3.47□□□□□ -1.85
VPS13D-207ENST00000476169 INO80EQ8NBZ0 244 aaPredicted RBP3.47□□□□□ -1.85
VPS13D-207ENST00000476169 ZNRF1Q8ND25 227 aa3.47□□□□□ -1.85
VPS13D-207ENST00000476169 OR2T6Q8NHC8 308 aa3.47□□□□□ -1.85
VPS13D-207ENST00000476169 HTR3CQ8WXA8 447 aa3.47□□□□□ -1.85
VPS13D-207ENST00000476169 ARL5BQ96KC2 179 aa3.47□□□□□ -1.85
VPS13D-207ENST00000476169 JSRP1Q96MG2 331 aaPredicted RBP3.47□□□□□ -1.85
VPS13D-207ENST00000476169 XPO6Q96QU8 1125 aaKnown RBP3.47□□□□□ -1.85
VPS13D-207ENST00000476169 CYP2S1Q96SQ9 504 aa3.47□□□□□ -1.85
VPS13D-207ENST00000476169 TMEM246Q9BRR3 403 aa3.47□□□□□ -1.85
VPS13D-207ENST00000476169 BBS2Q9BXC9 721 aa3.47□□□□□ -1.85
VPS13D-207ENST00000476169 MFFQ9GZY8 342 aa3.47□□□□□ -1.85
VPS13D-207ENST00000476169 NAT10Q9H0A0 1025 aaKnown RBP3.47□□□□□ -1.85
VPS13D-207ENST00000476169 PPDPFQ9H3Y8 114 aa3.47□□□□□ -1.85
VPS13D-207ENST00000476169 ZNF385DQ9H6B1 395 aa3.47□□□□□ -1.85
VPS13D-207ENST00000476169 NIPAL2Q9H841 368 aa3.47□□□□□ -1.85
VPS13D-207ENST00000476169 BEX1Q9HBH7 125 aa3.47□□□□□ -1.85
VPS13D-207ENST00000476169 NUDT15Q9NV35 164 aa3.47□□□□□ -1.85
VPS13D-207ENST00000476169 GPATCH2LQ9NWQ4 482 aa3.47□□□□□ -1.85
VPS13D-207ENST00000476169 STX18Q9P2W9 335 aaKnown RBP3.47□□□□□ -1.85
VPS13D-207ENST00000476169 CPQQ9Y646 472 aa3.47□□□□□ -1.85
VPS13D-207ENST00000476169 AUP1Q9Y679 476 aa3.47□□□□□ -1.85
VPS13D-207ENST00000476169 KDM6BO15054 1643 aa3.47□□□□□ -1.85
VPS13D-207ENST00000476169 CCNB3Q8WWL7 1395 aa3.47□□□□□ -1.85
VPS13D-207ENST00000476169 NCOA2Q15596 1464 aa3.47□□□□□ -1.85
VPS13D-207ENST00000476169 FYCO1Q9BQS8 1478 aa3.47□□□□□ -1.85
VPS13D-207ENST00000476169 MBD5Q9P267 1494 aa3.47□□□□□ -1.85
VPS13D-207ENST00000476169 FRMPD1Q5SYB0 1578 aa3.46□□□□□ -1.85
VPS13D-207ENST00000476169 PPRC1Q5VV67 1664 aaKnown RBP3.46□□□□□ -1.85
VPS13D-207ENST00000476169 KIF14Q15058 1648 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 NSG1A0A0A6YYJ2 146 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 IGHV3-20A0A0C4DH32 117 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 PMS2P5A8MQ11 134 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 G3V2L1 256 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 PDHXO00330 501 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 DYNC1I1O14576 645 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 FRAT2O75474 233 aaPredicted RBP3.46□□□□□ -1.86
VPS13D-207ENST00000476169 FCN3O75636 299 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 TSPAN13O95857 204 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 IGHG4P01861 327 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 IFNW1P05000 195 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 LGALS2P05162 132 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 SERPINE2P07093 398 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 CD48P09326 243 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 PRSS56P0CW18 603 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 DPEP1P16444 411 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 PMCHP20382 165 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 COX5AP20674 150 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 UGT1A4P22310 534 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 HTR1FP30939 366 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 HTR2BP41595 481 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 ELK3P41970 407 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 NSG1P42857 185 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 CX3CR1P49238 355 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 ATP4BP51164 291 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 CCNHP51946 323 aaPredicted RBP3.46□□□□□ -1.86
VPS13D-207ENST00000476169 ERVK-25P63136 954 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 LCN2P80188 198 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 MRPS22P82650 360 aaKnown RBP3.46□□□□□ -1.86
VPS13D-207ENST00000476169 VLDLRP98155 873 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 ZFP36L1Q07352 338 aaKnown RBP3.46□□□□□ -1.86
VPS13D-207ENST00000476169 OR5I1Q13606 314 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 NECTIN1Q15223 517 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 USF2Q15853 346 aaPredicted RBP3.46□□□□□ -1.86
VPS13D-207ENST00000476169 ISXQ2M1V0 245 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 KLHL22Q53GT1 634 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 PWWP2BQ6NUJ5 590 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 H3F3CQ6NXT2 135 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 FRRS1Q6ZNA5 592 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 MRPL21Q7Z2W9 205 aaKnown RBP3.46□□□□□ -1.86
VPS13D-207ENST00000476169 SNX20Q7Z614 316 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 RBM45Q8IUH3 476 aaKnown RBP3.46□□□□□ -1.86
VPS13D-207ENST00000476169 ZNF100Q8IYN0 542 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 ARHGAP18Q8N392 663 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 CSNK1A1LQ8N752 337 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 LRRC75AQ8NAA5 344 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 PRSS33Q8NF86 280 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 OR4D6Q8NGJ1 314 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 OR9A4Q8NGU2 314 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 ZNF519Q8TB69 540 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 FNDC8Q8TC99 324 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 DDI1Q8WTU0 396 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 CAPSLQ8WWF8 208 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 FAM131CQ96AQ9 280 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 ATXN7L3BQ96GX2 97 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 TMEM80Q96HE8 168 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 CELF6Q96J87 481 aaKnown RBP3.46□□□□□ -1.86
VPS13D-207ENST00000476169 CATSPER2Q96P56 530 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 TRNT1Q96Q11 434 aaKnown RBP3.46□□□□□ -1.86
VPS13D-207ENST00000476169 ZNF300Q96RE9 604 aaPredicted RBP3.46□□□□□ -1.86
VPS13D-207ENST00000476169 HSD17B14Q9BPX1 270 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 LLPHQ9BRT6 129 aaKnown RBP3.46□□□□□ -1.86
VPS13D-207ENST00000476169 TMEM175Q9BSA9 504 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 NDEL1Q9GZM8 345 aa3.46□□□□□ -1.86
VPS13D-207ENST00000476169 DMAP1Q9NPF5 467 aaPredicted RBP3.46□□□□□ -1.86
VPS13D-207ENST00000476169 ABCC13Q9NSE7 274 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms