RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 CCKARP32238 428 aa16.53■□□□□ 0.24
SHH-204ENST00000441114 NTF4P34130 210 aa16.53■□□□□ 0.24
SHH-204ENST00000441114 KRTAP10-9P60411 292 aa16.53■□□□□ 0.24
SHH-204ENST00000441114 LTBQ06643 244 aa16.53■□□□□ 0.24
SHH-204ENST00000441114 SAMD4BQ5PRF9 694 aaKnown RBP16.53■□□□□ 0.24
SHH-204ENST00000441114 FBXW10Q5XX13 1052 aa16.53■□□□□ 0.24
SHH-204ENST00000441114 LINC00114Q6XXX2 140 aa16.53■□□□□ 0.24
SHH-204ENST00000441114 STAC2Q6ZMT1 411 aa16.53■□□□□ 0.24
SHH-204ENST00000441114 RINLQ6ZS11 566 aa16.53■□□□□ 0.24
SHH-204ENST00000441114 OR9K2Q8NGE7 335 aa16.53■□□□□ 0.24
SHH-204ENST00000441114 ZNF417Q8TAU3 575 aa16.53■□□□□ 0.24
SHH-204ENST00000441114 APH1AQ96BI3 265 aa16.53■□□□□ 0.24
SHH-204ENST00000441114 HSH2DQ96JZ2 352 aa16.53■□□□□ 0.24
SHH-204ENST00000441114 ZNF587Q96SQ5 575 aaPredicted RBP16.53■□□□□ 0.24
SHH-204ENST00000441114 TMEM43Q9BTV4 400 aa16.53■□□□□ 0.24
SHH-204ENST00000441114 MED18Q9BUE0 208 aa16.53■□□□□ 0.24
SHH-204ENST00000441114 MCCC2Q9HCC0 563 aa16.53■□□□□ 0.24
SHH-204ENST00000441114 RIMS3Q9UJD0 308 aa16.53■□□□□ 0.24
SHH-204ENST00000441114 CELSR2Q9HCU4 2923 aa16.53■□□□□ 0.24
SHH-204ENST00000441114 BGLAPP02818 100 aa16.52■□□□□ 0.24
SHH-204ENST00000441114 NQO1P15559 274 aaKnown RBP16.52■□□□□ 0.24
SHH-204ENST00000441114 P2RY4P51582 365 aa16.52■□□□□ 0.24
SHH-204ENST00000441114 IFI44LQ53G44 452 aa16.52■□□□□ 0.24
SHH-204ENST00000441114 ALKBH2Q6NS38 261 aa16.52■□□□□ 0.24
SHH-204ENST00000441114 AAED1Q7RTV5 226 aa16.52■□□□□ 0.24
SHH-204ENST00000441114 NKAIN4Q8IVV8 208 aa16.52■□□□□ 0.24
SHH-204ENST00000441114 GABRG1Q8N1C3 465 aa16.52■□□□□ 0.24
SHH-204ENST00000441114 RBM15BQ8NDT2 890 aaKnown RBP16.52■□□□□ 0.24
SHH-204ENST00000441114 DACH2Q96NX9 599 aa16.52■□□□□ 0.24
SHH-204ENST00000441114 MOGAT1Q96PD6 335 aa16.52■□□□□ 0.24
SHH-204ENST00000441114 ZNF385AQ96PM9 386 aaKnown RBP16.52■□□□□ 0.24
SHH-204ENST00000441114 PRSS27Q9BQR3 290 aa16.52■□□□□ 0.24
SHH-204ENST00000441114 SF3B5Q9BWJ5 86 aaKnown RBP16.52■□□□□ 0.24
SHH-204ENST00000441114 ASPNQ9BXN1 380 aa16.52■□□□□ 0.24
SHH-204ENST00000441114 AMBRA1Q9C0C7 1298 aa16.52■□□□□ 0.24
SHH-204ENST00000441114 RPS6KA6Q9UK32 745 aa16.52■□□□□ 0.24
SHH-204ENST00000441114 RASD1Q9Y272 281 aa16.52■□□□□ 0.24
SHH-204ENST00000441114 SNX13Q9Y5W8 968 aa16.52■□□□□ 0.24
SHH-204ENST00000441114 ADGRG4Q8IZF6 3080 aa16.51■□□□□ 0.23
SHH-204ENST00000441114 NBPF19A0A087WUL8 3843 aa16.51■□□□□ 0.23
SHH-204ENST00000441114 A6NNC1 897 aa16.51■□□□□ 0.23
SHH-204ENST00000441114 OR5F1O95221 314 aa16.51■□□□□ 0.23
SHH-204ENST00000441114 CH25HO95992 272 aa16.51■□□□□ 0.23
SHH-204ENST00000441114 IFNW1P05000 195 aa16.51■□□□□ 0.23
SHH-204ENST00000441114 T-ENOLP0DO92 83 aa16.51■□□□□ 0.23
SHH-204ENST00000441114 HSD17B1P14061 328 aa16.51■□□□□ 0.23
SHH-204ENST00000441114 CALB2P22676 271 aa16.51■□□□□ 0.23
SHH-204ENST00000441114 PCYT1AP49585 367 aa16.51■□□□□ 0.23
SHH-204ENST00000441114 POU4F3Q15319 338 aa16.51■□□□□ 0.23
SHH-204ENST00000441114 CREB3L2Q70SY1 520 aa16.51■□□□□ 0.23
SHH-204ENST00000441114 H1FNTQ75WM6 255 aaPredicted RBP16.51■□□□□ 0.23
SHH-204ENST00000441114 ZIC4Q8N9L1 334 aa16.51■□□□□ 0.23
SHH-204ENST00000441114 GEMIN6Q8WXD5 167 aaKnown RBP16.51■□□□□ 0.23
SHH-204ENST00000441114 MPP4Q96JB8 637 aa16.51■□□□□ 0.23
SHH-204ENST00000441114 ACTR6Q9GZN1 396 aa16.51■□□□□ 0.23
SHH-204ENST00000441114 PARPBPQ9NWS1 579 aa16.51■□□□□ 0.23
SHH-204ENST00000441114 RHCGQ9UBD6 479 aa16.51■□□□□ 0.23
SHH-204ENST00000441114 CD300AQ9UGN4 299 aa16.51■□□□□ 0.23
SHH-204ENST00000441114 GPR52Q9Y2T5 361 aa16.51■□□□□ 0.23
SHH-204ENST00000441114 TESMINQ9Y4I5 508 aa16.51■□□□□ 0.23
SHH-204ENST00000441114 V9GYQ6 96 aa16.51■□□□□ 0.23
SHH-204ENST00000441114 J3KTA2 159 aa16.5■□□□□ 0.23
SHH-204ENST00000441114 LYZL6O75951 148 aa16.5■□□□□ 0.23
SHH-204ENST00000441114 VAMP5O95183 116 aa16.5■□□□□ 0.23
SHH-204ENST00000441114 IL32P24001 234 aa16.5■□□□□ 0.23
SHH-204ENST00000441114 FAPQ12884 760 aa16.5■□□□□ 0.23
SHH-204ENST00000441114 PMS2P3Q13401 168 aa16.5■□□□□ 0.23
SHH-204ENST00000441114 C1DQ13901 141 aaKnown RBP16.5■□□□□ 0.23
SHH-204ENST00000441114 SFRP5Q5T4F7 317 aa16.5■□□□□ 0.23
SHH-204ENST00000441114 FBXW9Q5XUX1 488 aa16.5■□□□□ 0.23
SHH-204ENST00000441114 Q6ZT83 130 aa16.5■□□□□ 0.23
SHH-204ENST00000441114 C22orf34Q6ZV56 151 aa16.5■□□□□ 0.23
SHH-204ENST00000441114 TRPM8Q7Z2W7 1104 aa16.5■□□□□ 0.23
SHH-204ENST00000441114 OR6S1Q8NH40 331 aa16.5■□□□□ 0.23
SHH-204ENST00000441114 TMEM255BQ8WV15 326 aa16.5■□□□□ 0.23
SHH-204ENST00000441114 PRRC1Q96M27 445 aa16.5■□□□□ 0.23
SHH-204ENST00000441114 OXGR1Q96P68 337 aa16.5■□□□□ 0.23
SHH-204ENST00000441114 POLR2J2Q9GZM3 115 aaKnown RBP16.5■□□□□ 0.23
SHH-204ENST00000441114 POLR2J3Q9H1A7 115 aaKnown RBP16.5■□□□□ 0.23
SHH-204ENST00000441114 UPB1Q9UBR1 384 aa16.5■□□□□ 0.23
SHH-204ENST00000441114 A4GNTQ9UNA3 340 aa16.5■□□□□ 0.23
SHH-204ENST00000441114 UMPSP11172 480 aa16.49■□□□□ 0.23
SHH-204ENST00000441114 ZNF43P17038 809 aa16.49■□□□□ 0.23
SHH-204ENST00000441114 PSMB1P20618 241 aaKnown RBP16.49■□□□□ 0.23
SHH-204ENST00000441114 IGHV1-2P23083 117 aa16.49■□□□□ 0.23
SHH-204ENST00000441114 IFNA8P32881 189 aa16.49■□□□□ 0.23
SHH-204ENST00000441114 CLDN17P56750 224 aa16.49■□□□□ 0.23
SHH-204ENST00000441114 ITGADQ13349 1161 aa16.49■□□□□ 0.23
SHH-204ENST00000441114 MFSD13AQ14CX5 517 aa16.49■□□□□ 0.23
SHH-204ENST00000441114 DAZAP2Q15038 168 aaPredicted RBP16.49■□□□□ 0.23
SHH-204ENST00000441114 C9orf135Q5VTT2 229 aa16.49■□□□□ 0.23
SHH-204ENST00000441114 NIPAL3Q6P499 406 aa16.49■□□□□ 0.23
SHH-204ENST00000441114 BHLHA15Q7RTS1 189 aaPredicted RBP16.49■□□□□ 0.23
SHH-204ENST00000441114 EPHX4Q8IUS5 362 aa16.49■□□□□ 0.23
SHH-204ENST00000441114 STEAP2Q8NFT2 490 aa16.49■□□□□ 0.23
SHH-204ENST00000441114 KISS1RQ969F8 398 aaPredicted RBP16.49■□□□□ 0.23
SHH-204ENST00000441114 TMEM45BQ96B21 275 aa16.49■□□□□ 0.23
SHH-204ENST00000441114 S100PBPQ96BU1 408 aa16.49■□□□□ 0.23
SHH-204ENST00000441114 FNDC11Q9BVV2 318 aa16.49■□□□□ 0.23
SHH-204ENST00000441114 HDHD5Q9BXW7 423 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms