RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 ATXN7L1Q9ULK2 861 aaPredicted RBP9.77□□□□□ -0.84
CUX1-205ENST00000425244 SPEF1Q9Y4P9 236 aa9.77□□□□□ -0.84
CUX1-205ENST00000425244 SEC16AO15027 2179 aa9.77□□□□□ -0.85
CUX1-205ENST00000425244 FAM171A2A8MVW0 826 aa9.77□□□□□ -0.85
CUX1-205ENST00000425244 PSMD9O00233 223 aa9.77□□□□□ -0.85
CUX1-205ENST00000425244 SCO2O43819 266 aa9.77□□□□□ -0.85
CUX1-205ENST00000425244 TFP02787 698 aa9.77□□□□□ -0.85
CUX1-205ENST00000425244 IFNA16P05015 189 aa9.77□□□□□ -0.85
CUX1-205ENST00000425244 TFPIP10646 304 aa9.77□□□□□ -0.85
CUX1-205ENST00000425244 S1PR1P21453 382 aa9.77□□□□□ -0.85
CUX1-205ENST00000425244 PTBP1P26599 531 aaKnown RBP eCLIP9.77□□□□□ -0.854e-11■■■■■ 42.8
CUX1-205ENST00000425244 GRPRP30550 384 aa9.77□□□□□ -0.85
CUX1-205ENST00000425244 THBS2P35442 1172 aa9.77□□□□□ -0.85
CUX1-205ENST00000425244 PITPNBP48739 271 aa9.77□□□□□ -0.85
CUX1-205ENST00000425244 SRP9P49458 86 aaKnown RBP9.77□□□□□ -0.85
CUX1-205ENST00000425244 CCR4P51679 360 aa9.77□□□□□ -0.85
CUX1-205ENST00000425244 AGFG1P52594 562 aaKnown RBP9.77□□□□□ -0.85
CUX1-205ENST00000425244 GPR176Q14439 515 aa9.77□□□□□ -0.85
CUX1-205ENST00000425244 MANEAQ5SRI9 462 aa9.77□□□□□ -0.85
CUX1-205ENST00000425244 NPSR1Q6W5P4 371 aa9.77□□□□□ -0.85
CUX1-205ENST00000425244 SNX33Q8WV41 574 aa9.77□□□□□ -0.85
CUX1-205ENST00000425244 SGTBQ96EQ0 304 aa9.77□□□□□ -0.85
CUX1-205ENST00000425244 PGLYRP3Q96LB9 341 aa9.77□□□□□ -0.85
CUX1-205ENST00000425244 ZFP3Q96NJ6 502 aa9.77□□□□□ -0.85
CUX1-205ENST00000425244 CNN2Q99439 309 aaKnown RBP9.77□□□□□ -0.85
CUX1-205ENST00000425244 KCNJ15Q99712 375 aa9.77□□□□□ -0.85
CUX1-205ENST00000425244 UQCC2Q9BRT2 126 aa9.77□□□□□ -0.85
CUX1-205ENST00000425244 ABCG5Q9H222 651 aa9.77□□□□□ -0.85
CUX1-205ENST00000425244 Q9N2J8 555 aa9.77□□□□□ -0.85
CUX1-205ENST00000425244 MKKSQ9NPJ1 570 aaPredicted RBP9.77□□□□□ -0.85
CUX1-205ENST00000425244 ST6GALNAC1Q9NSC7 600 aaPredicted RBP9.77□□□□□ -0.85
CUX1-205ENST00000425244 FBXO4Q9UKT5 387 aa9.77□□□□□ -0.85
CUX1-205ENST00000425244 ERVK-19Q9WJR5 959 aa9.77□□□□□ -0.85
CUX1-205ENST00000425244 SIGLEC6O43699 453 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 CPNE3O75131 537 aaKnown RBP9.76□□□□□ -0.85
CUX1-205ENST00000425244 NDUFB2O95178 105 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 CSTAP01040 98 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 FAM157BP0CG42 384 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 RNH1P13489 461 aaKnown RBP9.76□□□□□ -0.85
CUX1-205ENST00000425244 SNRPBP14678 240 aaKnown RBP9.76□□□□□ -0.85
CUX1-205ENST00000425244 ARSBP15848 533 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 GLB1P16278 677 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 RAB3BP20337 219 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 PSMB10P40306 273 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 CLDN20P56880 219 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 NRG3P56975 720 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 MTFR2Q6P444 385 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 GUSBP11Q6P575 273 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 ULK3Q6PHR2 472 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 OGFOD3Q6PK18 319 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 LYPD4Q6UWN0 246 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 TRILQ7L0X0 811 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 C10orf53Q8N6V4 93 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 DUSP18Q8NEJ0 188 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 OR5H6Q8NGV6 325 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 OR4C3Q8NH37 302 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 CCDC74AQ96AQ1 378 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 ZC3HAV1LQ96H79 300 aaKnown RBP9.76□□□□□ -0.85
CUX1-205ENST00000425244 VSTM2LQ96N03 204 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 DGAT2Q96PD7 388 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 NMNAT3Q96T66 252 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 TWSG1Q9GZX9 223 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 KCNN3Q9UGI6 736 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 BAIAP2Q9UQB8 552 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 ALPK2Q86TB3 2170 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 EP300Q09472 2414 aaPredicted RBP9.76□□□□□ -0.85
CUX1-205ENST00000425244 TRAV6A0A075B6T7 132 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 A0A1B0GTQ1 180 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 SDHBP21912 280 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 IL32P24001 234 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 RBM34P42696 430 aaKnown RBP9.76□□□□□ -0.85
CUX1-205ENST00000425244 ARL4DP49703 201 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 GDI2P50395 445 aaKnown RBP9.76□□□□□ -0.85
CUX1-205ENST00000425244 ATP12AP54707 1039 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 ERVK-25P63136 954 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 FHL1Q13642 323 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 Q5BKY6 102 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 DMKNQ6E0U4 476 aaPredicted RBP9.76□□□□□ -0.85
CUX1-205ENST00000425244 ESPNLQ6ZVH7 1005 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 ZNF550Q7Z398 422 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 LURAP1LQ8IV03 231 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 ZPLD1Q8TCW7 415 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 SAP25Q8TEE9 199 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 THAP4Q8WY91 577 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 ATOH1Q92858 354 aaPredicted RBP9.76□□□□□ -0.85
CUX1-205ENST00000425244 ABHD1Q96SE0 405 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 PDCD1LG2Q9BQ51 273 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 NUDT22Q9BRQ3 303 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 LMF2Q9BU23 707 aaKnown RBP9.76□□□□□ -0.85
CUX1-205ENST00000425244 BRD7Q9NPI1 651 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 PRTFDC1Q9NRG1 225 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 CUL9Q8IWT3 2517 aa9.76□□□□□ -0.85
CUX1-205ENST00000425244 IGHV1OR21-1A0A087WYE8 117 aa9.75□□□□□ -0.85
CUX1-205ENST00000425244 A0A0G2JK05 382 aa9.75□□□□□ -0.85
CUX1-205ENST00000425244 FAM25EA8MYX2 175 aa9.75□□□□□ -0.85
CUX1-205ENST00000425244 NUDT21O43809 227 aaKnown RBP9.75□□□□□ -0.85
CUX1-205ENST00000425244 SELENOFO60613 162 aa9.75□□□□□ -0.85
CUX1-205ENST00000425244 FZD7O75084 574 aa9.75□□□□□ -0.85
CUX1-205ENST00000425244 CD3GP09693 182 aa9.75□□□□□ -0.85
CUX1-205ENST00000425244 NPR2P20594 1047 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms