RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 RORCP51449 518 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 HOXC5Q00444 222 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 MAB21L1Q13394 359 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 RIN1Q13671 783 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 DOC2BQ14184 412 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 NSDHLQ15738 373 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 TMEM44Q2T9K0 475 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 RANBP3LQ86VV4 465 aaPredicted RBP13.06□□□□□ -0.32
HMGA1-203ENST00000374116 NKAIN4Q8IVV8 208 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 C9orf62Q8N4C0 152 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 KDF1Q8NAX2 398 aaPredicted RBP13.06□□□□□ -0.32
HMGA1-203ENST00000374116 DUSP18Q8NEJ0 188 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 OR8D4Q8NGM9 314 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 OR10Z1Q8NGY1 313 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 WDR54Q9H977 334 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 PTTG3PQ9NZH4 202 aa13.06□□□□□ -0.32
HMGA1-203ENST00000374116 KDM4EB2RXH2 506 aaPredicted RBP13.05□□□□□ -0.32
HMGA1-203ENST00000374116 KLF4O43474 513 aa13.05□□□□□ -0.32
HMGA1-203ENST00000374116 HCN1O60741 890 aa13.05□□□□□ -0.32
HMGA1-203ENST00000374116 CSF3P09919 207 aa13.05□□□□□ -0.32
HMGA1-203ENST00000374116 SLC35E2P0CK97 266 aa13.05□□□□□ -0.32
HMGA1-203ENST00000374116 MYL12AP19105 171 aa13.05□□□□□ -0.32
HMGA1-203ENST00000374116 NT5EP21589 574 aa13.05□□□□□ -0.32
HMGA1-203ENST00000374116 SOX3P41225 446 aa13.05□□□□□ -0.32
HMGA1-203ENST00000374116 KIR2DL3P43628 341 aa13.05□□□□□ -0.32
HMGA1-203ENST00000374116 GPR68Q15743 365 aa13.05□□□□□ -0.32
HMGA1-203ENST00000374116 DCST2Q5T1A1 773 aa13.05□□□□□ -0.32
HMGA1-203ENST00000374116 MEX3DQ86XN8 651 aaKnown RBP13.05□□□□□ -0.32
HMGA1-203ENST00000374116 OR1F2PQ96R84 312 aa13.05□□□□□ -0.32
HMGA1-203ENST00000374116 ADAP2Q9NPF8 381 aa13.05□□□□□ -0.32
HMGA1-203ENST00000374116 PRTFDC1Q9NRG1 225 aa13.05□□□□□ -0.32
HMGA1-203ENST00000374116 MED17Q9NVC6 651 aa13.05□□□□□ -0.32
HMGA1-203ENST00000374116 C14orf105Q9NVL8 296 aa13.05□□□□□ -0.32
HMGA1-203ENST00000374116 NTNG1Q9Y2I2 539 aa13.05□□□□□ -0.32
HMGA1-203ENST00000374116 CLDN16Q9Y5I7 305 aa13.05□□□□□ -0.32
HMGA1-203ENST00000374116 HS3ST3B1Q9Y662 390 aa13.05□□□□□ -0.32
HMGA1-203ENST00000374116 EPG5Q9HCE0 2579 aa13.05□□□□□ -0.32
HMGA1-203ENST00000374116 PTPRQQ9UMZ3 2332 aa13.05□□□□□ -0.32
HMGA1-203ENST00000374116 MED13Q9UHV7 2174 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 SOX30O94993 753 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 THY1P04216 161 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 CT62P0C5K7 136 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 S1PR1P21453 382 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 CRYBB2P43320 205 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 ZNF136P52737 540 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 GAS1P54826 345 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 B2MP61769 119 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 IGLV3-21P80748 117 aaPredicted RBP13.04□□□□□ -0.32
HMGA1-203ENST00000374116 MAP4K2Q12851 820 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 CHAF1BQ13112 559 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 SSPNQ14714 243 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 ZMAT1Q5H9K5 638 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 TMEM65Q6PI78 240 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 PPP1R32Q7Z5V6 425 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 NRMQ8IXM6 262 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 CLDN22Q8N7P3 220 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 COX18Q8N8Q8 333 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 RFKQ969G6 155 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 RNFT2Q96EX2 444 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 TM9SF2Q99805 663 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 CNPPD1Q9BV87 410 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 ASPNQ9BXN1 380 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 HDHD5Q9BXW7 423 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 BARHL1Q9BZE3 327 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 EVA1AQ9H8M9 152 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 ISYNA1Q9NPH2 558 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 POLE3Q9NRF9 147 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 SLC23A1Q9UHI7 598 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 NXT1Q9UKK6 140 aaKnown RBP13.04□□□□□ -0.32
HMGA1-203ENST00000374116 SLC7A7Q9UM01 511 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 EXOSC1Q9Y3B2 195 aaKnown RBP13.04□□□□□ -0.32
HMGA1-203ENST00000374116 A0A087WV48 116 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 TMEM129A0AVI4 362 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 TRAPPC13A5PLN9 417 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 ZNF670-ZNF695F2Z2N8 137 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 PLA2G10O15496 165 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 AKR7A2O43488 359 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 SLC43A1O75387 559 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 FAM157BP0CG42 384 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 NID1P14543 1247 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 CPEP16870 476 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 CFL1P23528 166 aaKnown RBP13.04□□□□□ -0.32
HMGA1-203ENST00000374116 MTNR1AP48039 350 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 ETV1P50549 477 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 PER3P56645 1201 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 CLDN20P56880 219 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 RRAS2P62070 204 aaPredicted RBP13.04□□□□□ -0.32
HMGA1-203ENST00000374116 CXADRP78310 365 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 ST3GAL2Q16842 350 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 TATDN3Q17R31 274 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 PLET1Q6UQ28 207 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 KIRREL2Q6UWL6 708 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 DGAT2L6Q6ZPD8 337 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 PHC2Q8IXK0 858 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 POGLUT1Q8NBL1 392 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 ENKURQ8TC29 256 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 ADAMTS17Q8TE56 1095 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 TMEM255BQ8WV15 326 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 EXOSC4Q9NPD3 245 aaKnown RBP13.04□□□□□ -0.32
HMGA1-203ENST00000374116 PNO1Q9NRX1 252 aaKnown RBP13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms