RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 OIT3Q8WWZ8 545 aa3.6□□□□□ -1.83
LIG4-201ENST00000356922 ACOT11Q8WXI4 607 aaPredicted RBP3.6□□□□□ -1.83
LIG4-201ENST00000356922 MIB2Q96AX9 1013 aa3.6□□□□□ -1.83
LIG4-201ENST00000356922 BPIFA2Q96DR5 249 aa3.6□□□□□ -1.83
LIG4-201ENST00000356922 ZNF385AQ96PM9 386 aaKnown RBP3.6□□□□□ -1.83
LIG4-201ENST00000356922 ZNF587Q96SQ5 575 aaPredicted RBP3.6□□□□□ -1.83
LIG4-201ENST00000356922 PRDM14Q9GZV8 571 aa3.6□□□□□ -1.83
LIG4-201ENST00000356922 EGLN3Q9H6Z9 239 aa3.6□□□□□ -1.83
LIG4-201ENST00000356922 PDP1Q9P0J1 537 aaPredicted RBP3.6□□□□□ -1.83
LIG4-201ENST00000356922 REV1Q9UBZ9 1251 aa3.6□□□□□ -1.83
LIG4-201ENST00000356922 CAMK2AQ9UQM7 478 aa3.6□□□□□ -1.83
LIG4-201ENST00000356922 ABCA4P78363 2273 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 ICE1Q9Y2F5 2266 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 A0A087WZY1 265 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 CLCA1A8K7I4 914 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 M0R129 80 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 AQP7O14520 342 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 SOX14O95416 240 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 TPOP07202 933 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 PNMTP11086 282 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 IFI30P13284 250 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 GRPRP30550 384 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 PTGS2P35354 604 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 AQP2P41181 271 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 EIF1P41567 113 aaKnown RBP3.59□□□□□ -1.83
LIG4-201ENST00000356922 ARHGDIAP52565 204 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 CARD18P57730 90 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 TAF11Q15544 211 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 MICAQ29983 383 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 ZNF362Q5T0B9 420 aaPredicted RBP3.59□□□□□ -1.83
LIG4-201ENST00000356922 C3orf33Q6P1S2 294 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 C1orf94Q6P1W5 598 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 ARHGAP11AQ6P4F7 1023 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 GFRALQ6UXV0 394 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 C22orf34Q6ZV56 151 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 MBOAT2Q6ZWT7 520 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 GALNT5Q7Z7M9 940 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 ZNF440Q8IYI8 595 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 PQLC1Q8N2U9 271 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 ZNRF4Q8WWF5 429 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 TMEM234Q8WY98 164 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 HTRA1Q92743 480 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 ZNF837Q96EG3 531 aaPredicted RBP3.59□□□□□ -1.83
LIG4-201ENST00000356922 KLHL15Q96M94 604 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 EMC6Q9BV81 110 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 MCCC2Q9HCC0 563 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 SERINC1Q9NRX5 453 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 DNAJB9Q9UBS3 223 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 ZNF346Q9UL40 294 aaKnown RBP3.59□□□□□ -1.83
LIG4-201ENST00000356922 OSGIN2Q9Y236 505 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 ADAM18Q9Y3Q7 739 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 PCDHGB5Q9Y5G0 923 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 CADP27708 2225 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 ANKHD1Q8IWZ3 2542 aaKnown RBP3.59□□□□□ -1.83
LIG4-201ENST00000356922 UNC79Q9P2D8 2635 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 DOPEY2Q9Y3R5 2298 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 ZNF716A6NP11 495 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 BLOC1S5-TXNDC5H3BN57 136 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 SULT2B1O00204 365 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 ZNF208O43345 1280 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 OR10H3O60404 316 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 HCN1O60741 890 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 SERPINI2O75830 405 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 PLGP00747 810 aaPredicted RBP3.59□□□□□ -1.83
LIG4-201ENST00000356922 CRYABP02511 175 aaKnown RBP3.59□□□□□ -1.83
LIG4-201ENST00000356922 TSPAN19P0C672 248 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 ZNF17P17021 662 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 PAX7P23759 505 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 PER3P56645 1201 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 PRKCDQ05655 676 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 RBPJQ06330 500 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 TRAM2Q15035 370 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 HBMQ6B0K9 141 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 ZNF730Q6ZMV8 503 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 STK32CQ86UX6 486 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 CCDC71Q8IV32 467 aaPredicted RBP3.59□□□□□ -1.83
LIG4-201ENST00000356922 MCEMP1Q8IX19 187 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 GHDCQ8N2G8 530 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 CBR4Q8N4T8 237 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 AQP11Q8NBQ7 271 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 ZPLD1Q8TCW7 415 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 SDCCAG3Q96C92 435 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 MED29Q9NX70 200 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 QPCTLQ9NXS2 382 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 SIGLEC7Q9Y286 467 aa3.59□□□□□ -1.83
LIG4-201ENST00000356922 IGKV1D-43A0A0B4J1Z2 117 aa3.59□□□□□ -1.84
LIG4-201ENST00000356922 MCIDASD6RGH6 385 aa3.59□□□□□ -1.84
LIG4-201ENST00000356922 C11orf98E9PRG8 122 aa3.59□□□□□ -1.84
LIG4-201ENST00000356922 EI24O14681 340 aa3.59□□□□□ -1.84
LIG4-201ENST00000356922 HNRNPRO43390 633 aaKnown RBP3.59□□□□□ -1.84
LIG4-201ENST00000356922 SLC2A10O95528 541 aa3.59□□□□□ -1.84
LIG4-201ENST00000356922 CLIC3O95833 236 aa3.59□□□□□ -1.84
LIG4-201ENST00000356922 LDLRP01130 860 aa3.59□□□□□ -1.84
LIG4-201ENST00000356922 IGHV3-9P01782 118 aa3.59□□□□□ -1.84
LIG4-201ENST00000356922 FASP25445 335 aa3.59□□□□□ -1.84
LIG4-201ENST00000356922 PPP2R2BQ00005 443 aa3.59□□□□□ -1.84
LIG4-201ENST00000356922 PMPCAQ10713 525 aa3.59□□□□□ -1.84
LIG4-201ENST00000356922 SELENBP1Q13228 472 aa3.59□□□□□ -1.84
LIG4-201ENST00000356922 ZNF239Q16600 458 aaKnown RBP3.59□□□□□ -1.84
LIG4-201ENST00000356922 ZNF800Q2TB10 664 aaPredicted RBP eCLIP3.59□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms