RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 HSPB2Q16082 182 aa19.75■□□□□ 0.75
SHMT1-203ENST00000354098 EXOC3L2Q2M3D2 409 aa19.75■□□□□ 0.75
SHMT1-203ENST00000354098 MCEMP1Q8IX19 187 aa19.75■□□□□ 0.75
SHMT1-203ENST00000354098 TUSC5Q8IXB3 177 aa19.75■□□□□ 0.75
SHMT1-203ENST00000354098 SLC43A2Q8N370 569 aa19.75■□□□□ 0.75
SHMT1-203ENST00000354098 SDCCAG3Q96C92 435 aa19.75■□□□□ 0.75
SHMT1-203ENST00000354098 BPIFA2Q96DR5 249 aa19.75■□□□□ 0.75
SHMT1-203ENST00000354098 SGTBQ96EQ0 304 aa19.75■□□□□ 0.75
SHMT1-203ENST00000354098 ALPK1Q96QP1 1244 aa19.75■□□□□ 0.75
SHMT1-203ENST00000354098 C6orf203Q9P0P8 240 aaPredicted RBP19.75■□□□□ 0.75
SHMT1-203ENST00000354098 U3KQV3 271 aa19.75■□□□□ 0.75
SHMT1-203ENST00000354098 MED12LQ86YW9 2145 aa19.74■□□□□ 0.75
SHMT1-203ENST00000354098 ZNF716A6NP11 495 aa19.74■□□□□ 0.75
SHMT1-203ENST00000354098 TIPRLO75663 272 aa19.74■□□□□ 0.75
SHMT1-203ENST00000354098 TNFSF13O75888 250 aa19.74■□□□□ 0.75
SHMT1-203ENST00000354098 PLGP00747 810 aaPredicted RBP19.74■□□□□ 0.75
SHMT1-203ENST00000354098 MT-ATP6P00846 226 aa19.74■□□□□ 0.75
SHMT1-203ENST00000354098 FUT1P19526 365 aa19.74■□□□□ 0.75
SHMT1-203ENST00000354098 MAKP20794 623 aa19.74■□□□□ 0.75
SHMT1-203ENST00000354098 LIMS1P48059 325 aa19.74■□□□□ 0.75
SHMT1-203ENST00000354098 PRKCDQ05655 676 aa19.74■□□□□ 0.75
SHMT1-203ENST00000354098 RNPS1Q15287 305 aaKnown RBP19.74■□□□□ 0.75
SHMT1-203ENST00000354098 GUSBP1Q15486 140 aa19.74■□□□□ 0.75
SHMT1-203ENST00000354098 GTF2IRD2BQ6EKJ0 949 aa19.74■□□□□ 0.75
SHMT1-203ENST00000354098 MRGPRGQ86SM5 289 aa19.74■□□□□ 0.75
SHMT1-203ENST00000354098 GTF2IRD2Q86UP8 949 aa19.74■□□□□ 0.75
SHMT1-203ENST00000354098 RNF113BQ8IZP6 322 aaKnown RBP19.74■□□□□ 0.75
SHMT1-203ENST00000354098 OR4K5Q8NGD3 323 aa19.74■□□□□ 0.75
SHMT1-203ENST00000354098 ITLN2Q8WWU7 325 aaPredicted RBP19.74■□□□□ 0.75
SHMT1-203ENST00000354098 DUS3LQ96G46 650 aaKnown RBP19.74■□□□□ 0.75
SHMT1-203ENST00000354098 GMPPAQ96IJ6 420 aaPredicted RBP19.74■□□□□ 0.75
SHMT1-203ENST00000354098 NANSQ9NR45 359 aa19.74■□□□□ 0.75
SHMT1-203ENST00000354098 A0A1W2PNV4 684 aa19.73■□□□□ 0.75
SHMT1-203ENST00000354098 SH3PXD2BA1X283 911 aa19.73■□□□□ 0.75
SHMT1-203ENST00000354098 CLEC18AA5D8T8 446 aa19.73■□□□□ 0.75
SHMT1-203ENST00000354098 TNFRSF11BO00300 401 aa19.73■□□□□ 0.75
SHMT1-203ENST00000354098 KRT36O76013 467 aa19.73■□□□□ 0.75
SHMT1-203ENST00000354098 IGF2P01344 180 aa19.73■□□□□ 0.75
SHMT1-203ENST00000354098 CTSSP25774 331 aa19.73■□□□□ 0.75
SHMT1-203ENST00000354098 KIR2DL2P43627 348 aaPredicted RBP19.73■□□□□ 0.75
SHMT1-203ENST00000354098 HMGA2P52926 109 aa19.73■□□□□ 0.75
SHMT1-203ENST00000354098 CTBP2P56545 445 aa19.73■□□□□ 0.75
SHMT1-203ENST00000354098 SIRPAP78324 504 aa19.73■□□□□ 0.75
SHMT1-203ENST00000354098 MFSD13AQ14CX5 517 aa19.73■□□□□ 0.75
SHMT1-203ENST00000354098 TMEM225Q6GV28 225 aa19.73■□□□□ 0.75
SHMT1-203ENST00000354098 CLEC18BQ6UXF7 455 aa19.73■□□□□ 0.75
SHMT1-203ENST00000354098 H1FNTQ75WM6 255 aaPredicted RBP19.73■□□□□ 0.75
SHMT1-203ENST00000354098 RRM2BQ7LG56 351 aa19.73■□□□□ 0.75
SHMT1-203ENST00000354098 MAMDC2Q7Z304 686 aaPredicted RBP19.73■□□□□ 0.75
SHMT1-203ENST00000354098 GPAT4Q86UL3 456 aa19.73■□□□□ 0.75
SHMT1-203ENST00000354098 FAM26EQ8N5C1 309 aa19.73■□□□□ 0.75
SHMT1-203ENST00000354098 CNEP1R1Q8N9A8 125 aa19.73■□□□□ 0.75
SHMT1-203ENST00000354098 CLEC18CQ8NCF0 446 aa19.73■□□□□ 0.75
SHMT1-203ENST00000354098 OR4C15Q8NGM1 316 aa19.73■□□□□ 0.75
SHMT1-203ENST00000354098 PIGXQ8TBF5 258 aa19.73■□□□□ 0.75
SHMT1-203ENST00000354098 ZFP3Q96NJ6 502 aa19.73■□□□□ 0.75
SHMT1-203ENST00000354098 ASPNQ9BXN1 380 aa19.73■□□□□ 0.75
SHMT1-203ENST00000354098 FKRPQ9H9S5 495 aa19.73■□□□□ 0.75
SHMT1-203ENST00000354098 CHST11Q9NPF2 352 aa19.73■□□□□ 0.75
SHMT1-203ENST00000354098 COQ3Q9NZJ6 369 aa19.73■□□□□ 0.75
SHMT1-203ENST00000354098 KLHL9Q9P2J3 617 aa19.73■□□□□ 0.75
SHMT1-203ENST00000354098 AP4S1Q9Y587 144 aa19.73■□□□□ 0.75
SHMT1-203ENST00000354098 WIPF3A6NGB9 483 aa19.72■□□□□ 0.75
SHMT1-203ENST00000354098 SS18L1O75177 396 aaPredicted RBP19.72■□□□□ 0.75
SHMT1-203ENST00000354098 OR7A10O76100 309 aa19.72■□□□□ 0.75
SHMT1-203ENST00000354098 ASAH2BP0C7U1 165 aa19.72■□□□□ 0.75
SHMT1-203ENST00000354098 HOXB6P17509 224 aaKnown RBP19.72■□□□□ 0.75
SHMT1-203ENST00000354098 BMP5P22003 454 aa19.72■□□□□ 0.75
SHMT1-203ENST00000354098 SMSP52788 366 aa19.72■□□□□ 0.75
SHMT1-203ENST00000354098 IST1P53990 364 aa19.72■□□□□ 0.75
SHMT1-203ENST00000354098 SLC17A1Q14916 467 aa19.72■□□□□ 0.75
SHMT1-203ENST00000354098 LAPTM4AQ15012 233 aa19.72■□□□□ 0.75
SHMT1-203ENST00000354098 VWA1Q6PCB0 445 aa19.72■□□□□ 0.75
SHMT1-203ENST00000354098 FAM214BQ7L5A3 538 aa19.72■□□□□ 0.75
SHMT1-203ENST00000354098 PYDC1Q8WXC3 89 aa19.72■□□□□ 0.75
SHMT1-203ENST00000354098 YY1AP1Q9H869 796 aa19.72■□□□□ 0.75
SHMT1-203ENST00000354098 BCO1Q9HAY6 547 aa19.72■□□□□ 0.75
SHMT1-203ENST00000354098 MRPL39Q9NYK5 338 aaKnown RBP19.72■□□□□ 0.75
SHMT1-203ENST00000354098 ZNF229Q9UJW7 825 aa19.72■□□□□ 0.75
SHMT1-203ENST00000354098 B3GALT5Q9Y2C3 310 aa19.72■□□□□ 0.75
SHMT1-203ENST00000354098 CORINQ9Y5Q5 1042 aa19.72■□□□□ 0.75
SHMT1-203ENST00000354098 DIDO1Q9BTC0 2240 aaKnown RBP19.72■□□□□ 0.75
SHMT1-203ENST00000354098 NCOA6Q14686 2063 aaPredicted RBP19.72■□□□□ 0.75
SHMT1-203ENST00000354098 GCN1Q92616 2671 aaKnown RBP19.72■□□□□ 0.75
SHMT1-203ENST00000354098 PCNX1Q96RV3 2341 aa19.72■□□□□ 0.75
SHMT1-203ENST00000354098 MS4A18H0YCH9 400 aa19.71■□□□□ 0.75
SHMT1-203ENST00000354098 YES1P07947 543 aa19.71■□□□□ 0.75
SHMT1-203ENST00000354098 AGTR1P30556 359 aa19.71■□□□□ 0.75
SHMT1-203ENST00000354098 GPR4P46093 362 aa19.71■□□□□ 0.75
SHMT1-203ENST00000354098 PMS2P3Q13401 168 aa19.71■□□□□ 0.75
SHMT1-203ENST00000354098 MS4A18Q3C1V0 323 aa19.71■□□□□ 0.75
SHMT1-203ENST00000354098 OR5J2Q8NH18 312 aa19.71■□□□□ 0.75
SHMT1-203ENST00000354098 FAM46AQ96IP4 442 aaKnown RBP19.71■□□□□ 0.75
SHMT1-203ENST00000354098 REEP1Q9H902 201 aa19.71■□□□□ 0.75
SHMT1-203ENST00000354098 GLRX2Q9NS18 164 aa19.71■□□□□ 0.75
SHMT1-203ENST00000354098 ARMC1Q9NVT9 282 aa19.71■□□□□ 0.75
SHMT1-203ENST00000354098 TMCC3Q9ULS5 477 aa19.71■□□□□ 0.75
SHMT1-203ENST00000354098 SAMHD1Q9Y3Z3 626 aaKnown RBP19.71■□□□□ 0.75
SHMT1-203ENST00000354098 USP9XQ93008 2570 aaPredicted RBP19.71■□□□□ 0.75
SHMT1-203ENST00000354098 PLPP3O14495 311 aa19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms