RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 LANCL3Q6ZV70 420 aa9.44□□□□□ -0.9
LIMA1-201ENST00000341247 JAZF1Q86VZ6 243 aa9.44□□□□□ -0.9
LIMA1-201ENST00000341247 LSM14AQ8ND56 463 aaKnown RBP9.44□□□□□ -0.9
LIMA1-201ENST00000341247 SLC35B4Q969S0 331 aa9.44□□□□□ -0.9
LIMA1-201ENST00000341247 PMEPA1Q969W9 287 aa9.44□□□□□ -0.9
LIMA1-201ENST00000341247 UBE2ZQ9H832 354 aaPredicted RBP9.44□□□□□ -0.9
LIMA1-201ENST00000341247 BRD7Q9NPI1 651 aa9.44□□□□□ -0.9
LIMA1-201ENST00000341247 GMEB2Q9UKD1 530 aa9.44□□□□□ -0.9
LIMA1-201ENST00000341247 MKL2Q9ULH7 1088 aa9.44□□□□□ -0.9
LIMA1-201ENST00000341247 ZNF337Q9Y3M9 751 aa9.44□□□□□ -0.9
LIMA1-201ENST00000341247 PCNX3Q9H6A9 2034 aa9.44□□□□□ -0.9
LIMA1-201ENST00000341247 TMEM72A0PK05 275 aa9.44□□□□□ -0.9
LIMA1-201ENST00000341247 CD3GP09693 182 aa9.44□□□□□ -0.9
LIMA1-201ENST00000341247 OR8G3PP0DMU2 310 aa9.44□□□□□ -0.9
LIMA1-201ENST00000341247 TFPIP10646 304 aa9.44□□□□□ -0.9
LIMA1-201ENST00000341247 RAB3BP20337 219 aa9.44□□□□□ -0.9
LIMA1-201ENST00000341247 AHCYP23526 432 aa9.44□□□□□ -0.9
LIMA1-201ENST00000341247 SOX2P48431 317 aa9.44□□□□□ -0.9
LIMA1-201ENST00000341247 GBX2P52951 348 aaPredicted RBP9.44□□□□□ -0.9
LIMA1-201ENST00000341247 LTBQ06643 244 aa9.44□□□□□ -0.9
LIMA1-201ENST00000341247 HLA-DQA1Q5Y7H0 255 aa9.44□□□□□ -0.9
LIMA1-201ENST00000341247 SIX5Q8N196 739 aa9.44□□□□□ -0.9
LIMA1-201ENST00000341247 GCDHQ92947 438 aaPredicted RBP9.44□□□□□ -0.9
LIMA1-201ENST00000341247 ITFG2Q969R8 447 aa9.44□□□□□ -0.9
LIMA1-201ENST00000341247 TMEM43Q9BTV4 400 aa9.44□□□□□ -0.9
LIMA1-201ENST00000341247 NCDNQ9UBB6 729 aa9.44□□□□□ -0.9
LIMA1-201ENST00000341247 ST6GALNAC2Q9UJ37 374 aa9.44□□□□□ -0.9
LIMA1-201ENST00000341247 ADAM30Q9UKF2 790 aa9.44□□□□□ -0.9
LIMA1-201ENST00000341247 BAIAP2Q9UQB8 552 aa9.44□□□□□ -0.9
LIMA1-201ENST00000341247 HTR3EA5X5Y0 456 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 LILRA5A6NI73 299 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 LMO7DNF2Z398 122 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 SMLR1H3BR10 107 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 ZNF264O43296 627 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 CDC40O60508 579 aaKnown RBP eCLIP9.43□□□□□ -0.9
LIMA1-201ENST00000341247 IL12BP29460 328 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 PSMD4P55036 377 aaKnown RBP9.43□□□□□ -0.9
LIMA1-201ENST00000341247 SIRPAP78324 504 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 ALG10Q5BKT4 473 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 ARHGAP40Q5TG30 622 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 DMKNQ6E0U4 476 aaPredicted RBP9.43□□□□□ -0.9
LIMA1-201ENST00000341247 ZNF671Q8TAW3 534 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 UPRTQ96BW1 309 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 ABHD1Q96SE0 405 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 ALG12Q9BV10 488 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 JAM3Q9BX67 310 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 TSPAN10Q9H1Z9 355 aaPredicted RBP9.43□□□□□ -0.9
LIMA1-201ENST00000341247 SERTAD3Q9UJW9 196 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 ATXN7L1Q9ULK2 861 aaPredicted RBP9.43□□□□□ -0.9
LIMA1-201ENST00000341247 TRAV6A0A075B6T7 132 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 DCNP07585 359 aaKnown RBP9.43□□□□□ -0.9
LIMA1-201ENST00000341247 ATF1P18846 271 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 RORAP35398 523 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 ACTC1P68032 377 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 ACTA1P68133 377 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 IFITM2Q01629 132 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 BDH1Q02338 343 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 EGR4Q05215 589 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 SERTAD2Q14140 314 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 HES5Q5TA89 166 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 WBP2NLQ6ICG8 309 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 DPY19L2P2Q6ZN68 376 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 PRSS45Q7RTY3 260 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 KANSL1Q7Z3B3 1105 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 OR8K3Q8NH51 312 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 PMM1Q92871 262 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 DERL3Q96Q80 235 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 NUDT22Q9BRQ3 303 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 SLC7A5P2Q9GIP4 190 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 FSCN3Q9NQT6 498 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 MRPL15Q9P015 296 aaKnown RBP9.43□□□□□ -0.9
LIMA1-201ENST00000341247 CTSFQ9UBX1 484 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 RAD1O60671 282 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 THBS2P35442 1172 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 DIO1P49895 249 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 NRG3P56975 720 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 LGALS3BPQ08380 585 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 CDK5R1Q15078 307 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 TMEM53Q6P2H8 277 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 SERPINA12Q8IW75 414 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 SLC35F3Q8IY50 421 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 ZNF527Q8NB42 609 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 LPAR4Q99677 370 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 THAP7Q9BT49 309 aaPredicted RBP9.43□□□□□ -0.9
LIMA1-201ENST00000341247 NRIP3Q9NQ35 241 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 INPP5EQ9NRR6 644 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 IKZF2Q9UKS7 526 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 ALG5Q9Y673 324 aa9.43□□□□□ -0.9
LIMA1-201ENST00000341247 A0A0G2JK05 382 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 CENPXA8MT69 81 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 PIAS2O75928 621 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 OR2T7P0C7T2 308 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 CSF2RBP32927 897 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 TAS2R43P59537 309 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 ZNF117Q03924 483 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 RPL18Q07020 188 aaKnown RBP9.42□□□□□ -0.9
LIMA1-201ENST00000341247 SKP2Q13309 424 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 ZNF74Q16587 644 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 MZT2BQ6NZ67 158 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 TSSK4Q6SA08 328 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 128.6 ms