RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 PSD4Q8NDX1 1056 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 OR4F15Q8NGB8 312 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 OR52E2Q8NGJ4 325 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 OR52I1Q8NGK6 324 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 SMAP2Q8WU79 429 aaPredicted RBP3.74□□□□□ -1.81
MCF2-201ENST00000338585 ZNRF4Q8WWF5 429 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 LIPHQ8WWY8 451 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 RORBQ92753 470 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 KISS1RQ969F8 398 aaPredicted RBP3.74□□□□□ -1.81
MCF2-201ENST00000338585 NMD3Q96D46 503 aaKnown RBP3.74□□□□□ -1.81
MCF2-201ENST00000338585 RNFT2Q96EX2 444 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 Q96M85 177 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 SIGLEC12Q96PQ1 595 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 OR5M11Q96RB7 305 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 TEX12Q9BXU0 123 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 HES7Q9BYE0 225 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 PRRG3Q9BZD7 231 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 OR51V1Q9H2C8 321 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 VCX3AQ9NNX9 186 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 NRIP3Q9NQ35 241 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 TAS2R5Q9NYW4 299 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 PLA2G3Q9NZ20 509 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 CNOT2Q9NZN8 540 aaKnown RBP3.74□□□□□ -1.81
MCF2-201ENST00000338585 ZNF229Q9UJW7 825 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 CDV3Q9UKY7 258 aaKnown RBP3.74□□□□□ -1.81
MCF2-201ENST00000338585 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP3.74□□□□□ -1.81
MCF2-201ENST00000338585 RPL36Q9Y3U8 105 aaKnown RBP3.74□□□□□ -1.81
MCF2-201ENST00000338585 TEX13CA0A0J9YWL9 993 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 CCDC182A6NF36 153 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 TRABD2BA6NFA1 517 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 LRRC3CA6NJW4 275 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 FTCDNL1E5RQL4 147 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 C11orf98E9PRG8 122 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 H7C1C5 153 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 M0R082 166 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 AHSA1O95433 338 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 RFPL3SP0C7P2 107 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 LIPCP11150 499 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 IMPDH2P12268 514 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 PIPP12273 146 aaPredicted RBP3.73□□□□□ -1.81
MCF2-201ENST00000338585 ACVR2AP27037 513 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 DPP4P27487 766 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 CD79BP40259 229 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 APOBEC1P41238 236 aaKnown RBP3.73□□□□□ -1.81
MCF2-201ENST00000338585 HTR3AP46098 478 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 MTNR1AP48039 350 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 CYB561P49447 251 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 ETV1P50549 477 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 SLC16A1P53985 500 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 DLX5P56178 289 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 CTXN1P60606 82 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 PRPS1P60891 318 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 LCN6P62502 163 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 KHDRBS1Q07666 443 aaKnown RBP eCLIP3.73□□□□□ -1.81
MCF2-201ENST00000338585 AIMP2Q13155 320 aaKnown RBP3.73□□□□□ -1.81
MCF2-201ENST00000338585 OR7A5Q15622 319 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 TBCEQ15813 527 aaPredicted RBP3.73□□□□□ -1.81
MCF2-201ENST00000338585 GLYR1Q49A26 553 aaPredicted RBP3.73□□□□□ -1.81
MCF2-201ENST00000338585 KLHL12Q53G59 568 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 ALG10Q5BKT4 473 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 ABHD17BQ5VST6 288 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 NXNL2Q5VZ03 156 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 TIGD3Q6B0B8 471 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 ARHGAP11AQ6P4F7 1023 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 TMEM81Q6P7N7 255 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 DPY19L2P2Q6ZN68 376 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 FAM122BQ7Z309 247 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 SVOPQ8N4V2 548 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 CLEC1AQ8NC01 280 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 FAM98AQ8NCA5 519 aaKnown RBP3.73□□□□□ -1.81
MCF2-201ENST00000338585 LSM14AQ8ND56 463 aaKnown RBP3.73□□□□□ -1.81
MCF2-201ENST00000338585 OR51L1Q8NGJ5 315 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 OR1J4Q8NGS1 313 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 ZNF417Q8TAU3 575 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 DGCR14Q96DF8 476 aaKnown RBP3.73□□□□□ -1.81
MCF2-201ENST00000338585 MRGPRX4Q96LA9 322 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 TSPAN32Q96QS1 320 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 ZNF587Q96SQ5 575 aaPredicted RBP3.73□□□□□ -1.81
MCF2-201ENST00000338585 SECISBP2Q96T21 854 aaKnown RBP3.73□□□□□ -1.81
MCF2-201ENST00000338585 NMNAT3Q96T66 252 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 FUNDC2Q9BWH2 189 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 CDCA4Q9BXL8 241 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 YIPF3Q9GZM5 350 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 FKRPQ9H9S5 495 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 LRFN1Q9P244 771 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 WARS2Q9UGM6 360 aaKnown RBP3.73□□□□□ -1.81
MCF2-201ENST00000338585 KLK13Q9UKR3 277 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 ZNF346Q9UL40 294 aaKnown RBP3.73□□□□□ -1.81
MCF2-201ENST00000338585 NCKAP5O14513 1909 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 FREM3P0C091 2139 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 A0A1W2PNR3 127 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 HTR3EA5X5Y0 456 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 OR6C68A6NDL8 312 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 FAM171A2A8MVW0 826 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 PRR23D1E9PI22 279 aaPredicted RBP3.73□□□□□ -1.81
MCF2-201ENST00000338585 ARPC3O15145 178 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 ZIC3O60481 467 aa3.73□□□□□ -1.81
MCF2-201ENST00000338585 MRPS14O60783 128 aaKnown RBP3.73□□□□□ -1.81
MCF2-201ENST00000338585 TRIM3O75382 744 aaPredicted RBP3.73□□□□□ -1.81
MCF2-201ENST00000338585 NEURL1O76050 574 aa3.73□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms