RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 MOSPD2Q8NHP6 518 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 HIST1H2ACQ93077 130 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 MIB2Q96AX9 1013 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 ARL5BQ96KC2 179 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 LRR1Q96L50 414 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 C5orf34Q96MH7 638 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 SNX18Q96RF0 628 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 IL4I1Q96RQ9 567 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 ASPNQ9BXN1 380 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 PLA2G3Q9NZ20 509 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 IL20RAQ9UHF4 553 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 KLHL21Q9UJP4 597 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 B3GALT5Q9Y2C3 310 aa13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 PCDHGA9Q9Y5G4 932 aaKnown RBP13.44□□□□□ -0.26
CCDC88C-202ENST00000334448 A0A1W2PNV4 684 aa13.43□□□□□ -0.26
CCDC88C-202ENST00000334448 A6NL46 340 aa13.43□□□□□ -0.26
CCDC88C-202ENST00000334448 SNTNA6NMZ2 147 aa13.43□□□□□ -0.26
CCDC88C-202ENST00000334448 SHISA8B8ZZ34 492 aa13.43□□□□□ -0.26
CCDC88C-202ENST00000334448 KLRC4-KLRK1H3BQV0 150 aa13.43□□□□□ -0.26
CCDC88C-202ENST00000334448 PLPP3O14495 311 aa13.43□□□□□ -0.26
CCDC88C-202ENST00000334448 FAM20BO75063 409 aa13.43□□□□□ -0.26
CCDC88C-202ENST00000334448 PPP1R3DO95685 299 aa13.43□□□□□ -0.26
CCDC88C-202ENST00000334448 CLPTM1O96005 669 aa13.43□□□□□ -0.26
CCDC88C-202ENST00000334448 IFNGP01579 166 aa13.43□□□□□ -0.26
CCDC88C-202ENST00000334448 TFAP2AP05549 437 aa13.43□□□□□ -0.26
CCDC88C-202ENST00000334448 RFPL3SP0C7P2 107 aa13.43□□□□□ -0.26
CCDC88C-202ENST00000334448 EIF2S3P41091 472 aaKnown RBP13.43□□□□□ -0.26
CCDC88C-202ENST00000334448 AQP2P41181 271 aa13.43□□□□□ -0.26
CCDC88C-202ENST00000334448 CCL11P51671 97 aa13.43□□□□□ -0.26
CCDC88C-202ENST00000334448 GPR85P60893 370 aa13.43□□□□□ -0.26
CCDC88C-202ENST00000334448 ARG2P78540 354 aa13.43□□□□□ -0.26
CCDC88C-202ENST00000334448 MYBPHQ13203 477 aa13.43□□□□□ -0.26
CCDC88C-202ENST00000334448 NXNL2Q5VZ03 156 aa13.43□□□□□ -0.26
CCDC88C-202ENST00000334448 ASB18Q6ZVZ8 466 aa13.43□□□□□ -0.26
CCDC88C-202ENST00000334448 PRSS48Q7RTY5 328 aa13.43□□□□□ -0.26
CCDC88C-202ENST00000334448 GID4Q8IVV7 300 aa13.43□□□□□ -0.26
CCDC88C-202ENST00000334448 RFKQ969G6 155 aa13.43□□□□□ -0.26
CCDC88C-202ENST00000334448 PLEKHA8Q96JA3 519 aa13.43□□□□□ -0.26
CCDC88C-202ENST00000334448 ZNF582Q96NG8 517 aaPredicted RBP13.43□□□□□ -0.26
CCDC88C-202ENST00000334448 UBL7Q96S82 380 aaPredicted RBP13.43□□□□□ -0.26
CCDC88C-202ENST00000334448 DDOQ99489 341 aa13.43□□□□□ -0.26
CCDC88C-202ENST00000334448 TAS2R5Q9NYW4 299 aa13.43□□□□□ -0.26
CCDC88C-202ENST00000334448 AASSQ9UDR5 926 aa13.43□□□□□ -0.26
CCDC88C-202ENST00000334448 MED13Q9UHV7 2174 aa13.43□□□□□ -0.26
CCDC88C-202ENST00000334448 RPL36Q9Y3U8 105 aaKnown RBP13.43□□□□□ -0.26
CCDC88C-202ENST00000334448 DCHS1Q96JQ0 3298 aa13.43□□□□□ -0.26
CCDC88C-202ENST00000334448 APC2O95996 2303 aa13.42□□□□□ -0.26
CCDC88C-202ENST00000334448 LOC102725191A0A1B0GVB3 256 aa13.42□□□□□ -0.26
CCDC88C-202ENST00000334448 GJE1A6NN92 205 aa13.42□□□□□ -0.26
CCDC88C-202ENST00000334448 RIIAD1A6NNX1 92 aa13.42□□□□□ -0.26
CCDC88C-202ENST00000334448 M0R082 166 aa13.42□□□□□ -0.26
CCDC88C-202ENST00000334448 PMS2P2O95744 297 aa13.42□□□□□ -0.26
CCDC88C-202ENST00000334448 F10P00742 488 aa13.42□□□□□ -0.26
CCDC88C-202ENST00000334448 ADRB1P08588 477 aa13.42□□□□□ -0.26
CCDC88C-202ENST00000334448 ZNF3P17036 446 aa13.42□□□□□ -0.26
CCDC88C-202ENST00000334448 SDHAP31040 664 aa13.42□□□□□ -0.26
CCDC88C-202ENST00000334448 RPL5P46777 297 aaKnown RBP13.42□□□□□ -0.26
CCDC88C-202ENST00000334448 ALDH3B2P48448 385 aa13.42□□□□□ -0.26
CCDC88C-202ENST00000334448 NR1H2P55055 460 aa13.42□□□□□ -0.26
CCDC88C-202ENST00000334448 CDH15P55291 814 aa13.42□□□□□ -0.26
CCDC88C-202ENST00000334448 GFRA1P56159 465 aa13.42□□□□□ -0.26
CCDC88C-202ENST00000334448 FOXK1P85037 733 aa13.42□□□□□ -0.26
CCDC88C-202ENST00000334448 ZNF91Q05481 1191 aa13.42□□□□□ -0.26
CCDC88C-202ENST00000334448 ARMC4Q5T2S8 1044 aa13.42□□□□□ -0.26
CCDC88C-202ENST00000334448 RAET1LQ5VY80 246 aa13.42□□□□□ -0.26
CCDC88C-202ENST00000334448 RNLSQ5VYX0 342 aa13.42□□□□□ -0.26
CCDC88C-202ENST00000334448 H1FNTQ75WM6 255 aaPredicted RBP13.42□□□□□ -0.26
CCDC88C-202ENST00000334448 SPACA3Q8IXA5 215 aa13.42□□□□□ -0.26
CCDC88C-202ENST00000334448 FAM83FQ8NEG4 500 aaPredicted RBP13.42□□□□□ -0.26
CCDC88C-202ENST00000334448 ANKK1Q8NFD2 765 aa13.42□□□□□ -0.26
CCDC88C-202ENST00000334448 ZNF417Q8TAU3 575 aa13.42□□□□□ -0.26
CCDC88C-202ENST00000334448 JSRP1Q96MG2 331 aaPredicted RBP13.42□□□□□ -0.26
CCDC88C-202ENST00000334448 ZNF587Q96SQ5 575 aaPredicted RBP13.42□□□□□ -0.26
CCDC88C-202ENST00000334448 KATNB1Q9BVA0 655 aa13.42□□□□□ -0.26
CCDC88C-202ENST00000334448 TAPBPLQ9BX59 468 aa13.42□□□□□ -0.26
CCDC88C-202ENST00000334448 HES7Q9BYE0 225 aa13.42□□□□□ -0.26
CCDC88C-202ENST00000334448 TTTY12Q9BZ98 90 aa13.42□□□□□ -0.26
CCDC88C-202ENST00000334448 CCDC86Q9H6F5 360 aaKnown RBP13.42□□□□□ -0.26
CCDC88C-202ENST00000334448 CHST11Q9NPF2 352 aa13.42□□□□□ -0.26
CCDC88C-202ENST00000334448 HINT3Q9NQE9 182 aaKnown RBP13.42□□□□□ -0.26
CCDC88C-202ENST00000334448 DNAJC27Q9NZQ0 273 aa13.42□□□□□ -0.26
CCDC88C-202ENST00000334448 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.42□□□□□ -0.26
CCDC88C-202ENST00000334448 PCDHGB7Q9Y5F8 929 aa13.42□□□□□ -0.26
CCDC88C-202ENST00000334448 TRAV17A0A0B4J275 112 aa13.41□□□□□ -0.26
CCDC88C-202ENST00000334448 IRGMA1A4Y4 181 aa13.41□□□□□ -0.26
CCDC88C-202ENST00000334448 BLOC1S5-TXNDC5H3BN57 136 aa13.41□□□□□ -0.26
CCDC88C-202ENST00000334448 SEC14L5O43304 696 aa13.41□□□□□ -0.26
CCDC88C-202ENST00000334448 RGS10O43665 173 aa13.41□□□□□ -0.26
CCDC88C-202ENST00000334448 SMNDC1O75940 238 aaKnown RBP eCLIP13.41□□□□□ -0.26
CCDC88C-202ENST00000334448 TFPIP10646 304 aa13.41□□□□□ -0.26
CCDC88C-202ENST00000334448 JUNBP17275 347 aaPredicted RBP13.41□□□□□ -0.26
CCDC88C-202ENST00000334448 HTR1FP30939 366 aa13.41□□□□□ -0.26
CCDC88C-202ENST00000334448 RPL4P36578 427 aaKnown RBP13.41□□□□□ -0.26
CCDC88C-202ENST00000334448 P2RY4P51582 365 aa13.41□□□□□ -0.26
CCDC88C-202ENST00000334448 MVKQ03426 396 aa13.41□□□□□ -0.26
CCDC88C-202ENST00000334448 PUDPQ08623 228 aa13.41□□□□□ -0.26
CCDC88C-202ENST00000334448 PMS2P3Q13401 168 aa13.41□□□□□ -0.26
CCDC88C-202ENST00000334448 ZNF766Q5HY98 468 aa13.41□□□□□ -0.26
CCDC88C-202ENST00000334448 NIPAL3Q6P499 406 aa13.41□□□□□ -0.26
CCDC88C-202ENST00000334448 TMPPEQ6ZT21 453 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms