RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 ACTR6Q9GZN1 396 aa14□□□□□ -0.17
CLN3-201ENST00000333496 OR10A4Q9H209 315 aa14□□□□□ -0.17
CLN3-201ENST00000333496 TMEM27Q9HBJ8 222 aa14□□□□□ -0.17
CLN3-201ENST00000333496 FANCFQ9NPI8 374 aa14□□□□□ -0.17
CLN3-201ENST00000333496 ZNF226Q9NYT6 803 aa14□□□□□ -0.17
CLN3-201ENST00000333496 TAS2R1Q9NYW7 299 aa14□□□□□ -0.17
CLN3-201ENST00000333496 CELSR1Q9NYQ6 3014 aa14□□□□□ -0.17
CLN3-201ENST00000333496 A0A087WUJ7 227 aa13.99□□□□□ -0.17
CLN3-201ENST00000333496 FAM220BPB1ANY3 271 aa13.99□□□□□ -0.17
CLN3-201ENST00000333496 GSC2O15499 205 aa13.99□□□□□ -0.17
CLN3-201ENST00000333496 AHSA1O95433 338 aa13.99□□□□□ -0.17
CLN3-201ENST00000333496 IGHV3-9P01782 118 aa13.99□□□□□ -0.17
CLN3-201ENST00000333496 LOXP28300 417 aaPredicted RBP13.99□□□□□ -0.17
CLN3-201ENST00000333496 DNAJA1P31689 397 aaKnown RBP13.99□□□□□ -0.17
CLN3-201ENST00000333496 CDH12P55289 794 aa13.99□□□□□ -0.17
CLN3-201ENST00000333496 ITGADQ13349 1161 aa13.99□□□□□ -0.17
CLN3-201ENST00000333496 DNAL1Q4LDG9 190 aa13.99□□□□□ -0.17
CLN3-201ENST00000333496 ERICH5Q6P6B1 374 aa13.99□□□□□ -0.17
CLN3-201ENST00000333496 RANBP3LQ86VV4 465 aaPredicted RBP13.99□□□□□ -0.17
CLN3-201ENST00000333496 P3H2Q8IVL5 708 aa13.99□□□□□ -0.17
CLN3-201ENST00000333496 ZNF100Q8IYN0 542 aa13.99□□□□□ -0.17
CLN3-201ENST00000333496 ZIC4Q8N9L1 334 aa13.99□□□□□ -0.17
CLN3-201ENST00000333496 RBM15BQ8NDT2 890 aaKnown RBP13.99□□□□□ -0.17
CLN3-201ENST00000333496 SLC26A7Q8TE54 656 aa13.99□□□□□ -0.17
CLN3-201ENST00000333496 TAAR8Q969N4 342 aa13.99□□□□□ -0.17
CLN3-201ENST00000333496 S100PBPQ96BU1 408 aa13.99□□□□□ -0.17
CLN3-201ENST00000333496 SLC47A1Q96FL8 570 aa13.99□□□□□ -0.17
CLN3-201ENST00000333496 DENND2DQ9H6A0 471 aaPredicted RBP13.99□□□□□ -0.17
CLN3-201ENST00000333496 PLEKHF2Q9H8W4 249 aa13.99□□□□□ -0.17
CLN3-201ENST00000333496 FMO6PO60774 539 aa13.98□□□□□ -0.17
CLN3-201ENST00000333496 THY1P04216 161 aa13.98□□□□□ -0.17
CLN3-201ENST00000333496 PNMTP11086 282 aa13.98□□□□□ -0.17
CLN3-201ENST00000333496 PPP3CBP16298 524 aa13.98□□□□□ -0.17
CLN3-201ENST00000333496 IGHV1-2P23083 117 aa13.98□□□□□ -0.17
CLN3-201ENST00000333496 MXRA7P84157 204 aa13.98□□□□□ -0.17
CLN3-201ENST00000333496 P2RY6Q15077 328 aa13.98□□□□□ -0.17
CLN3-201ENST00000333496 ENTPD8Q5MY95 495 aa13.98□□□□□ -0.17
CLN3-201ENST00000333496 LINC00114Q6XXX2 140 aa13.98□□□□□ -0.17
CLN3-201ENST00000333496 OR2T12Q8NG77 320 aa13.98□□□□□ -0.17
CLN3-201ENST00000333496 OR9K2Q8NGE7 335 aa13.98□□□□□ -0.17
CLN3-201ENST00000333496 VANGL1Q8TAA9 524 aaPredicted RBP13.98□□□□□ -0.17
CLN3-201ENST00000333496 SLC25A36Q96CQ1 311 aa13.98□□□□□ -0.17
CLN3-201ENST00000333496 ZNF385AQ96PM9 386 aaKnown RBP13.98□□□□□ -0.17
CLN3-201ENST00000333496 SF3B5Q9BWJ5 86 aaKnown RBP13.98□□□□□ -0.17
CLN3-201ENST00000333496 HDHD5Q9BXW7 423 aa13.98□□□□□ -0.17
CLN3-201ENST00000333496 C1orf21Q9H246 121 aa13.98□□□□□ -0.17
CLN3-201ENST00000333496 EFCAB1Q9HAE3 211 aa13.98□□□□□ -0.17
CLN3-201ENST00000333496 SEC14L4Q9UDX3 406 aa13.98□□□□□ -0.17
CLN3-201ENST00000333496 ALPK2Q86TB3 2170 aa13.98□□□□□ -0.17
CLN3-201ENST00000333496 ZNF469Q96JG9 3925 aaPredicted RBP13.97□□□□□ -0.17
CLN3-201ENST00000333496 CPSF4LA6NMK7 179 aaKnown RBP13.97□□□□□ -0.17
CLN3-201ENST00000333496 NME4O00746 187 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 KLF4O43474 513 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 MRPL33O75394 65 aaKnown RBP13.97□□□□□ -0.17
CLN3-201ENST00000333496 LYZL6O75951 148 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 LYPD3O95274 346 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 CNOT4O95628 575 aaKnown RBP13.97□□□□□ -0.17
CLN3-201ENST00000333496 TNFRSF1BP20333 461 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 COX5AP20674 150 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 PTNP21246 168 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 FBXW9Q5XUX1 488 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 TMEM225Q6GV28 225 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 ZNF613Q6PF04 617 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 C5orf46Q6UWT4 87 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 HACD2Q6Y1H2 254 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 MICU2Q8IYU8 434 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 STEAP2Q8NFT2 490 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 RASSF5Q8WWW0 418 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 APH1AQ96BI3 265 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 HS3ST6Q96QI5 342 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 CXorf56Q9H5V9 222 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 SLC9A8Q9Y2E8 581 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 CCDC168Q8NDH2 2452 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 ELOVL7A1L3X0 281 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 KDELR2P33947 212 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 NUDT2P50583 147 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 SLC7A2P52569 658 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 FOXG1P55316 489 aaPredicted RBP13.97□□□□□ -0.17
CLN3-201ENST00000333496 LTBQ06643 244 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 FAM69AQ5T7M9 428 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 CASP12Q6UXS9 341 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 WDR88Q6ZMY6 472 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 ARPINQ7Z6K5 226 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 GPAT4Q86UL3 456 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 KDM8Q8N371 416 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 RNF217Q8TC41 542 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 ADAMTS16Q8TE57 1224 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 KISS1RQ969F8 398 aaPredicted RBP13.97□□□□□ -0.17
CLN3-201ENST00000333496 TMEM45BQ96B21 275 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 PIK3IP1Q96FE7 263 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 HOPXQ9BPY8 73 aaPredicted RBP13.97□□□□□ -0.17
CLN3-201ENST00000333496 PCDHAC1Q9H158 963 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 ST6GALNAC2Q9UJ37 374 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 ITGB1BP2Q9UKP3 347 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 SH3GLB1Q9Y371 365 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 DSCAMO60469 2012 aa13.97□□□□□ -0.17
CLN3-201ENST00000333496 TRAV36DV7A0A075B6V5 113 aa13.96□□□□□ -0.17
CLN3-201ENST00000333496 CHP2O43745 196 aa13.96□□□□□ -0.17
CLN3-201ENST00000333496 OR2T1O43869 369 aa13.96□□□□□ -0.17
CLN3-201ENST00000333496 RPSAP08865 295 aaKnown RBP13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms