RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 C19orf84I3L1E1 186 aa11.35□□□□□ -0.59
SS18-202ENST00000269138 EEF1E1O43324 174 aaKnown RBP11.35□□□□□ -0.59
SS18-202ENST00000269138 SMNDC1O75940 238 aaKnown RBP eCLIP11.35□□□□□ -0.59
SS18-202ENST00000269138 STAMBPO95630 424 aa11.35□□□□□ -0.59
SS18-202ENST00000269138 H1F0P07305 194 aaKnown RBP11.35□□□□□ -0.59
SS18-202ENST00000269138 EDNRAP25101 427 aa11.35□□□□□ -0.59
SS18-202ENST00000269138 IFNA8P32881 189 aa11.35□□□□□ -0.59
SS18-202ENST00000269138 NTF4P34130 210 aa11.35□□□□□ -0.59
SS18-202ENST00000269138 RBM34P42696 430 aaKnown RBP11.35□□□□□ -0.59
SS18-202ENST00000269138 TFF3Q07654 80 aa11.35□□□□□ -0.59
SS18-202ENST00000269138 FLOT2Q14254 428 aa11.35□□□□□ -0.59
SS18-202ENST00000269138 ZNF74Q16587 644 aa11.35□□□□□ -0.59
SS18-202ENST00000269138 SLC25A35Q3KQZ1 300 aa11.35□□□□□ -0.59
SS18-202ENST00000269138 LUZP2Q86TE4 346 aa11.35□□□□□ -0.59
SS18-202ENST00000269138 ZNF610Q8N9Z0 462 aa11.35□□□□□ -0.59
SS18-202ENST00000269138 OR6S1Q8NH40 331 aa11.35□□□□□ -0.59
SS18-202ENST00000269138 OR52J3Q8NH60 311 aa11.35□□□□□ -0.59
SS18-202ENST00000269138 HS6ST2Q96MM7 605 aa11.35□□□□□ -0.59
SS18-202ENST00000269138 SLC19A3Q9BZV2 496 aa11.35□□□□□ -0.59
SS18-202ENST00000269138 TRIM15Q9C019 465 aa11.35□□□□□ -0.59
SS18-202ENST00000269138 C12orf49Q9H741 205 aa11.35□□□□□ -0.59
SS18-202ENST00000269138 BCO1Q9HAY6 547 aa11.35□□□□□ -0.59
SS18-202ENST00000269138 JKAMPQ9P055 326 aa11.35□□□□□ -0.59
SS18-202ENST00000269138 KLHL9Q9P2J3 617 aa11.35□□□□□ -0.59
SS18-202ENST00000269138 EMC9Q9Y3B6 208 aa11.35□□□□□ -0.59
SS18-202ENST00000269138 COL12A1Q99715 3063 aa11.34□□□□□ -0.59
SS18-202ENST00000269138 DOPEY2Q9Y3R5 2298 aa11.34□□□□□ -0.59
SS18-202ENST00000269138 IGKV3D-15A0A087WSY6 115 aa11.34□□□□□ -0.59
SS18-202ENST00000269138 A0A087WUU8 490 aa11.34□□□□□ -0.59
SS18-202ENST00000269138 TRBV4-1A0A0J9YWV2 114 aa11.34□□□□□ -0.59
SS18-202ENST00000269138 AQP12BA6NM10 295 aa11.34□□□□□ -0.59
SS18-202ENST00000269138 ENO4A6NNW6 628 aa11.34□□□□□ -0.59
SS18-202ENST00000269138 HPRP00739 348 aa11.34□□□□□ -0.59
SS18-202ENST00000269138 ITGA2P17301 1181 aa11.34□□□□□ -0.59
SS18-202ENST00000269138 SLC16A1P53985 500 aa11.34□□□□□ -0.59
SS18-202ENST00000269138 CHRNB3Q05901 458 aa11.34□□□□□ -0.59
SS18-202ENST00000269138 SLC17A1Q14916 467 aa11.34□□□□□ -0.59
SS18-202ENST00000269138 PDK3Q15120 406 aa11.34□□□□□ -0.59
SS18-202ENST00000269138 SEC23BQ15437 767 aa11.34□□□□□ -0.59
SS18-202ENST00000269138 TMEM201Q5SNT2 666 aa11.34□□□□□ -0.59
SS18-202ENST00000269138 TMEM225Q6GV28 225 aa11.34□□□□□ -0.59
SS18-202ENST00000269138 PODNL1Q6PEZ8 512 aa11.34□□□□□ -0.59
SS18-202ENST00000269138 H1FNTQ75WM6 255 aaPredicted RBP11.34□□□□□ -0.59
SS18-202ENST00000269138 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.34□□□□□ -0.59
SS18-202ENST00000269138 SLC46A3Q7Z3Q1 461 aa11.34□□□□□ -0.59
SS18-202ENST00000269138 PIWIL3Q7Z3Z3 882 aaKnown RBP11.34□□□□□ -0.59
SS18-202ENST00000269138 GPAT4Q86UL3 456 aa11.34□□□□□ -0.59
SS18-202ENST00000269138 SPATA24Q86W54 205 aa11.34□□□□□ -0.59
SS18-202ENST00000269138 AQP12AQ8IXF9 295 aa11.34□□□□□ -0.59
SS18-202ENST00000269138 NRMQ8IXM6 262 aa11.34□□□□□ -0.59
SS18-202ENST00000269138 ZIC4Q8N9L1 334 aa11.34□□□□□ -0.59
SS18-202ENST00000269138 OR6K3Q8NGY3 331 aa11.34□□□□□ -0.59
SS18-202ENST00000269138 SLC7A13Q8TCU3 470 aa11.34□□□□□ -0.59
SS18-202ENST00000269138 CANT1Q8WVQ1 401 aa11.34□□□□□ -0.59
SS18-202ENST00000269138 DHRS1Q96LJ7 313 aa11.34□□□□□ -0.59
SS18-202ENST00000269138 MMADHCQ9H3L0 296 aaPredicted RBP11.34□□□□□ -0.59
SS18-202ENST00000269138 MAGIXQ9H6Y5 334 aa11.34□□□□□ -0.59
SS18-202ENST00000269138 GP6Q9HCN6 339 aa11.34□□□□□ -0.59
SS18-202ENST00000269138 CHST11Q9NPF2 352 aa11.34□□□□□ -0.59
SS18-202ENST00000269138 NPDC1Q9NQX5 325 aaPredicted RBP11.34□□□□□ -0.59
SS18-202ENST00000269138 C6orf203Q9P0P8 240 aaPredicted RBP11.34□□□□□ -0.59
SS18-202ENST00000269138 MED31Q9Y3C7 131 aa11.34□□□□□ -0.59
SS18-202ENST00000269138 INTS1Q8N201 2190 aaKnown RBP11.34□□□□□ -0.59
SS18-202ENST00000269138 USP9YO00507 2555 aaPredicted RBP11.33□□□□□ -0.59
SS18-202ENST00000269138 A0A1W2PRQ8 180 aa11.33□□□□□ -0.6
SS18-202ENST00000269138 TCRBV3S1A0A5B6 114 aa11.33□□□□□ -0.6
SS18-202ENST00000269138 ZNF724A8MTY0 619 aa11.33□□□□□ -0.6
SS18-202ENST00000269138 PRSS44E7EML9 344 aa11.33□□□□□ -0.6
SS18-202ENST00000269138 MS4A18H0YCH9 400 aa11.33□□□□□ -0.6
SS18-202ENST00000269138 FUT1P19526 365 aa11.33□□□□□ -0.6
SS18-202ENST00000269138 COL8A1P27658 744 aa11.33□□□□□ -0.6
SS18-202ENST00000269138 GTF2E2P29084 291 aaKnown RBP11.33□□□□□ -0.6
SS18-202ENST00000269138 MAGEA2P43356 314 aa11.33□□□□□ -0.6
SS18-202ENST00000269138 SPIBQ01892 262 aa11.33□□□□□ -0.6
SS18-202ENST00000269138 PMS2P3Q13401 168 aa11.33□□□□□ -0.6
SS18-202ENST00000269138 DGCR6Q14129 220 aa11.33□□□□□ -0.6
SS18-202ENST00000269138 MS4A18Q3C1V0 323 aa11.33□□□□□ -0.6
SS18-202ENST00000269138 FAM98BQ52LJ0 330 aaKnown RBP11.33□□□□□ -0.6
SS18-202ENST00000269138 FGD3Q5JSP0 725 aa11.33□□□□□ -0.6
SS18-202ENST00000269138 EEF1A1P5Q5VTE0 462 aa11.33□□□□□ -0.6
SS18-202ENST00000269138 ZNF474Q6S9Z5 364 aaPredicted RBP11.33□□□□□ -0.6
SS18-202ENST00000269138 ZNF730Q6ZMV8 503 aa11.33□□□□□ -0.6
SS18-202ENST00000269138 OR9K2Q8NGE7 335 aa11.33□□□□□ -0.6
SS18-202ENST00000269138 ACOT11Q8WXI4 607 aaPredicted RBP11.33□□□□□ -0.6
SS18-202ENST00000269138 SGTBQ96EQ0 304 aa11.33□□□□□ -0.6
SS18-202ENST00000269138 ZNF385AQ96PM9 386 aaKnown RBP11.33□□□□□ -0.6
SS18-202ENST00000269138 FUZQ9BT04 418 aa11.33□□□□□ -0.6
SS18-202ENST00000269138 ASPNQ9BXN1 380 aa11.33□□□□□ -0.6
SS18-202ENST00000269138 PIGMQ9H3S5 423 aa11.33□□□□□ -0.6
SS18-202ENST00000269138 PLSCR4Q9NRQ2 329 aa11.33□□□□□ -0.6
SS18-202ENST00000269138 MRPL39Q9NYK5 338 aaKnown RBP11.33□□□□□ -0.6
SS18-202ENST00000269138 B3GAT1Q9P2W7 334 aa11.33□□□□□ -0.6
SS18-202ENST00000269138 PROCRQ9UNN8 238 aa11.33□□□□□ -0.6
SS18-202ENST00000269138 AURKCQ9UQB9 309 aa11.33□□□□□ -0.6
SS18-202ENST00000269138 FLVCR1Q9Y5Y0 555 aa11.33□□□□□ -0.6
SS18-202ENST00000269138 SPTAN1Q13813 2472 aaKnown RBP11.32□□□□□ -0.6
SS18-202ENST00000269138 UTP20O75691 2785 aaKnown RBP11.32□□□□□ -0.6
SS18-202ENST00000269138 DHRS12A0PJE2 317 aa11.32□□□□□ -0.6
SS18-202ENST00000269138 A8MXE2 369 aa11.32□□□□□ -0.6
SS18-202ENST00000269138 PLPP3O14495 311 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms