RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 FCRLAQ7L513 359 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 GATSQ8NAP1 163 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 RPLP0P6Q8NHW5 317 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 OR2A5Q96R48 311 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 DDOQ99489 341 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 SEMA4CQ9C0C4 833 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 CYB5R1Q9UHQ9 305 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 SLC17A4Q9Y2C5 497 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 PRSS38A1L453 326 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 SC5DO75845 299 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 HOXD4P09016 255 aaPredicted RBP9.23□□□□□ -0.93
LIG3-201ENST00000262327 SLC2A5P22732 501 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 SOX2P48431 317 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 PGDP52209 483 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 OC90Q02509 493 aaPredicted RBP9.23□□□□□ -0.93
LIG3-201ENST00000262327 ERV3-1Q14264 604 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 ZNF542PQ5EBM4 170 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 ZNF776Q68DI1 518 aaPredicted RBP9.23□□□□□ -0.93
LIG3-201ENST00000262327 SLC25A25Q6KCM7 469 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 CORO6Q6QEF8 472 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 CFAP77Q6ZQR2 320 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 GPALPP1Q8IXQ4 340 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 FTMTQ8N4E7 242 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 DNAAF1Q8NEP3 725 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 OR52I2Q8NH67 350 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 KCTD12Q96CX2 325 aaKnown RBP9.23□□□□□ -0.93
LIG3-201ENST00000262327 RASD2Q96D21 266 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 TSPAN10Q9H1Z9 355 aaPredicted RBP9.23□□□□□ -0.93
LIG3-201ENST00000262327 RANBP3Q9H6Z4 567 aaPredicted RBP9.23□□□□□ -0.93
LIG3-201ENST00000262327 DLL4Q9NR61 685 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 DCAF16Q9NXF7 216 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 SPATA2Q9UM82 520 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 C19orf53Q9UNZ5 99 aaPredicted RBP9.23□□□□□ -0.93
LIG3-201ENST00000262327 COLEC10Q9Y6Z7 277 aa9.23□□□□□ -0.93
LIG3-201ENST00000262327 PTP4A3O75365 173 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 PPM1BO75688 479 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 UBL3O95164 117 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 EGFP01133 1207 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 FOSL2P15408 326 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 LSSP48449 732 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 RPS15AP62244 130 aaKnown RBP9.22□□□□□ -0.93
LIG3-201ENST00000262327 RPS11P62280 158 aaKnown RBP eCLIP9.22□□□□□ -0.93
LIG3-201ENST00000262327 RPS21P63220 83 aaKnown RBP9.22□□□□□ -0.93
LIG3-201ENST00000262327 BTN1A1Q13410 526 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 TMEM81Q6P7N7 255 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 FIGLAQ6QHK4 219 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 COMMD7Q86VX2 200 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 TPRA1Q86W33 373 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 OR52R1Q8NGF1 315 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 OR8K3Q8NH51 312 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 JAM3Q9BX67 310 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 C20orf85Q9H1P6 137 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 EMC7Q9NPA0 242 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 PHF11Q9UIL8 331 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 SLC22A7Q9Y694 548 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 H0YC42 278 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 H0YGG7 62 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 ARPC1BO15143 372 aaKnown RBP9.22□□□□□ -0.93
LIG3-201ENST00000262327 PIN1P1O15428 100 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 RGS11O94810 467 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 GAAP10253 952 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 SRFP11831 508 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 UGT2B7P16662 529 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 BTF3P20290 206 aaKnown RBP9.22□□□□□ -0.93
LIG3-201ENST00000262327 BLVRAP53004 296 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 ARF3P61204 181 aaPredicted RBP9.22□□□□□ -0.93
LIG3-201ENST00000262327 ERVK-25P63136 954 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 SIRPAP78324 504 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 CDK5R1Q15078 307 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 ANGPT1Q15389 498 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 HSD17B12Q53GQ0 312 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 FCRL6Q6DN72 434 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 ZNF704Q6ZNC4 412 aaPredicted RBP9.22□□□□□ -0.93
LIG3-201ENST00000262327 TMPRSS11FQ6ZWK6 438 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 NLRC3Q7RTR2 1065 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 ZNF511Q8NB15 262 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 UXS1Q8NBZ7 420 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 FAM3CQ92520 227 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 HSPA12BQ96MM6 686 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 OR2M4Q96R27 311 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 C2orf42Q9NWW7 574 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 DTX4Q9Y2E6 619 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 HEATR5AQ86XA9 2040 aa9.22□□□□□ -0.93
LIG3-201ENST00000262327 POM121CA8CG34 1229 aa9.21□□□□□ -0.93
LIG3-201ENST00000262327 PRR32B1ATL7 298 aa9.21□□□□□ -0.93
LIG3-201ENST00000262327 IGKV1D-16P01601 117 aa9.21□□□□□ -0.93
LIG3-201ENST00000262327 TPOP07202 933 aa9.21□□□□□ -0.93
LIG3-201ENST00000262327 THBS1P07996 1170 aa9.21□□□□□ -0.93
LIG3-201ENST00000262327 ANXA7P20073 488 aaKnown RBP9.21□□□□□ -0.93
LIG3-201ENST00000262327 GALP22466 123 aa9.21□□□□□ -0.93
LIG3-201ENST00000262327 RAD52P43351 418 aa9.21□□□□□ -0.93
LIG3-201ENST00000262327 MMP15P51511 669 aa9.21□□□□□ -0.93
LIG3-201ENST00000262327 GBX2P52951 348 aaPredicted RBP9.21□□□□□ -0.93
LIG3-201ENST00000262327 TDGQ13569 410 aa9.21□□□□□ -0.93
LIG3-201ENST00000262327 FHL1Q13642 323 aa9.21□□□□□ -0.93
LIG3-201ENST00000262327 KLF9Q13886 244 aaPredicted RBP9.21□□□□□ -0.93
LIG3-201ENST00000262327 KCNAB1Q14722 419 aa9.21□□□□□ -0.93
LIG3-201ENST00000262327 FHL5Q5TD97 284 aa9.21□□□□□ -0.93
LIG3-201ENST00000262327 CD276Q5ZPR3 534 aa9.21□□□□□ -0.93
LIG3-201ENST00000262327 USP53Q70EK8 1073 aa9.21□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms