RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 SPATA31A5Q5VU36 1347 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 USP54Q70EL1 1684 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 MYOCOSA0A1B0GUC4 107 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 TMEM8BA6NDV4 472 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 FAM181BA6NEQ2 426 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 FOXN1O15353 648 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 SRPX2O60687 465 aaPredicted RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 NTSR2O95665 410 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 OR8U9P0C7N5 309 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 SYN1P17600 705 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 GMPRP36959 345 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 SEC13P55735 322 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 YBX1P67809 324 aaKnown RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 GBE1Q04446 702 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 LAMTOR4Q0VGL1 99 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 ILKQ13418 452 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 MEP1BQ16820 701 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 TMEM236Q5W0B7 351 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 C22orf42Q6IC83 251 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 OR52W1Q6IF63 320 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 LIAT1Q6ZQX7 453 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 CALHM1Q8IU99 346 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 OR10AD1Q8NGE0 317 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 THEM6Q8WUY1 208 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 SLC25A44Q96H78 314 aaPredicted RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 IKZF4Q9H2S9 585 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 PRTFDC1Q9NRG1 225 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 FAM198AQ9UFP1 575 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 TESQ9UGI8 421 aaKnown RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 FZD10Q9ULW2 581 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 PXDNLA1KZ92 1463 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 TRAV9-2A0A087WT02 112 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 RAB27BO00194 218 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 CXCR6O00574 342 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 OR1F1O43749 312 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 SDC3O75056 442 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 MPDU1O75352 247 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 UNGP13051 313 aaPredicted RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 RAB6AP20340 208 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 TACR3P29371 465 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 PIGAP37287 484 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 RAB10P61026 200 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 DUSP28Q4G0W2 176 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 SAMD13Q5VXD3 122 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 HIST2H3AQ71DI3 136 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 MKXQ8IYA7 352 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 STPG3Q8N7X2 389 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 GDPD1Q8N9F7 314 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 GLYATL2Q8WU03 294 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 ZNRF4Q8WWF5 429 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 MBD3L1Q8WWY6 194 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 THAP4Q8WY91 577 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 TMEM59Q9BXS4 323 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 NMUR2Q9GZQ4 415 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 MS4A7Q9GZW8 240 aaPredicted RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 ADAMTS10Q9H324 1103 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 SPANXA1Q9NS26 97 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 TAS2R8Q9NYW2 309 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 MYEF2Q9P2K5 600 aaKnown RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 ADAMTS6Q9UKP5 1117 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 AGO1Q9UL18 857 aaKnown RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 BTRCQ9Y297 605 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 RNF114Q9Y508 228 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 LAMB4A4D0S4 1761 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 A0A0J9YYE9 177 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 A0A1W2PS18 150 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 F5H5P2 479 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 NDUFS4O43181 175 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 HTR1AP08908 422 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 ARAFP10398 606 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 FUT1P19526 365 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 ERVK11-1P61568 191 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 CHIT1Q13231 466 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 DHRS2Q13268 280 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 PPA1Q15181 289 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF791Q3KP31 576 aaPredicted RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 BCL2L15Q5TBC7 163 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 NHLRC1Q6VVB1 395 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 OR2W3Q7Z3T1 314 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 MEX3DQ86XN8 651 aaKnown RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 KMT5CQ86Y97 462 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 SLC38A6Q8IZM9 456 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 ARFGAP1Q8N6T3 406 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 OR2M3Q8NG83 312 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 OR4K14Q8NGD5 310 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 OR4L1Q8NH43 312 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 ARSGQ96EG1 525 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF641Q96N77 438 aaPredicted RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF582Q96NG8 517 aaPredicted RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 RDH12Q96NR8 316 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 SMG9Q9H0W8 520 aaKnown RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 WDR13Q9H1Z4 485 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 RIMS4Q9H426 269 aaPredicted RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 TUBA4BQ9H853 241 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 GCM1Q9NP62 436 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 KLK14Q9P0G3 267 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 TSPAN16Q9UKR8 245 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 AGLP35573 1532 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 ADGRB1O14514 1584 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 A0A0D9SG52 128 aa2.61□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms