RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 ROPN1BQ9BZX4 212 aaPredicted RBP16.87■□□□□ 0.29
CLN3-262ENST00000637699 DPY30Q9C005 99 aa16.87■□□□□ 0.29
CLN3-262ENST00000637699 RAB1BQ9H0U4 201 aa16.87■□□□□ 0.29
CLN3-262ENST00000637699 ROPN1Q9HAT0 212 aaPredicted RBP16.87■□□□□ 0.29
CLN3-262ENST00000637699 OBP2BQ9NPH6 170 aa16.87■□□□□ 0.29
CLN3-262ENST00000637699 ASIC5Q9NY37 505 aa16.87■□□□□ 0.29
CLN3-262ENST00000637699 MARCOQ9UEW3 520 aaPredicted RBP16.87■□□□□ 0.29
CLN3-262ENST00000637699 NR5A2O00482 541 aa16.86■□□□□ 0.29
CLN3-262ENST00000637699 SCN2BO60939 215 aa16.86■□□□□ 0.29
CLN3-262ENST00000637699 STAMBPO95630 424 aa16.86■□□□□ 0.29
CLN3-262ENST00000637699 GPIP06744 558 aa16.86■□□□□ 0.29
CLN3-262ENST00000637699 ITGA2P17301 1181 aa16.86■□□□□ 0.29
CLN3-262ENST00000637699 IL2RGP31785 369 aa16.86■□□□□ 0.29
CLN3-262ENST00000637699 IDH3GP51553 393 aaPredicted RBP16.86■□□□□ 0.29
CLN3-262ENST00000637699 UBE2NP61088 152 aaKnown RBP16.86■□□□□ 0.29
CLN3-262ENST00000637699 SYPL1Q16563 259 aa16.86■□□□□ 0.29
CLN3-262ENST00000637699 TMEM225Q6GV28 225 aa16.86■□□□□ 0.29
CLN3-262ENST00000637699 ANKFN1Q8N957 763 aa16.86■□□□□ 0.29
CLN3-262ENST00000637699 NEURL3Q96EH8 262 aa16.86■□□□□ 0.29
CLN3-262ENST00000637699 BOD1Q96IK1 185 aa16.86■□□□□ 0.29
CLN3-262ENST00000637699 SLC35A5Q9BS91 424 aa16.86■□□□□ 0.29
CLN3-262ENST00000637699 SF3B5Q9BWJ5 86 aaKnown RBP16.86■□□□□ 0.29
CLN3-262ENST00000637699 PARD6BQ9BYG5 372 aa16.86■□□□□ 0.29
CLN3-262ENST00000637699 PLK3Q9H4B4 646 aa16.86■□□□□ 0.29
CLN3-262ENST00000637699 TMEFF2Q9UIK5 374 aaPredicted RBP16.86■□□□□ 0.29
CLN3-262ENST00000637699 LIPT2A6NK58 231 aa16.85■□□□□ 0.29
CLN3-262ENST00000637699 ZNF587BE7ETH6 402 aa16.85■□□□□ 0.29
CLN3-262ENST00000637699 HMGN4O00479 90 aa16.85■□□□□ 0.29
CLN3-262ENST00000637699 PDE5AO76074 875 aa16.85■□□□□ 0.29
CLN3-262ENST00000637699 DAOP14920 347 aa16.85■□□□□ 0.29
CLN3-262ENST00000637699 CXCR1P25024 350 aa16.85■□□□□ 0.29
CLN3-262ENST00000637699 PPOXP50336 477 aa16.85■□□□□ 0.29
CLN3-262ENST00000637699 MAP2K6P52564 334 aa16.85■□□□□ 0.29
CLN3-262ENST00000637699 NAAAQ02083 359 aa16.85■□□□□ 0.29
CLN3-262ENST00000637699 RUNX1T1Q06455 604 aa16.85■□□□□ 0.29
CLN3-262ENST00000637699 EFNB3Q15768 340 aa16.85■□□□□ 0.29
CLN3-262ENST00000637699 PDCD2Q16342 344 aaPredicted RBP16.85■□□□□ 0.29
CLN3-262ENST00000637699 ANXA8L1Q5VT79 327 aa16.85■□□□□ 0.29
CLN3-262ENST00000637699 CMIPQ8IY22 773 aa16.85■□□□□ 0.29
CLN3-262ENST00000637699 ZCCHC24Q8N2G6 241 aaKnown RBP16.85■□□□□ 0.29
CLN3-262ENST00000637699 VPS37AQ8NEZ2 397 aa16.85■□□□□ 0.29
CLN3-262ENST00000637699 BCL2L2Q92843 193 aaPredicted RBP16.85■□□□□ 0.29
CLN3-262ENST00000637699 ALKBH3Q96Q83 286 aaPredicted RBP16.85■□□□□ 0.29
CLN3-262ENST00000637699 SLC38A1Q9H2H9 487 aa16.85■□□□□ 0.29
CLN3-262ENST00000637699 AKTIPQ9H8T0 292 aa16.85■□□□□ 0.29
CLN3-262ENST00000637699 SEC61A2Q9H9S3 476 aa16.85■□□□□ 0.29
CLN3-262ENST00000637699 A0A096LPE4 126 aa16.84■□□□□ 0.29
CLN3-262ENST00000637699 A0A1W2PPZ6 126 aa16.84■□□□□ 0.29
CLN3-262ENST00000637699 CFAP73A6NFT4 308 aa16.84■□□□□ 0.29
CLN3-262ENST00000637699 AGAP5A6NIR3 686 aa16.84■□□□□ 0.29
CLN3-262ENST00000637699 AQP7P3A6NL99 342 aa16.84■□□□□ 0.29
CLN3-262ENST00000637699 CHRM4P08173 479 aa16.84■□□□□ 0.29
CLN3-262ENST00000637699 CECR9P0C854 216 aa16.84■□□□□ 0.29
CLN3-262ENST00000637699 UQCRBP14927 111 aa16.84■□□□□ 0.29
CLN3-262ENST00000637699 APEX1P27695 318 aaKnown RBP16.84■□□□□ 0.29
CLN3-262ENST00000637699 CALCRP30988 508 aa16.84■□□□□ 0.29
CLN3-262ENST00000637699 SELENOPP49908 381 aa16.84■□□□□ 0.29
CLN3-262ENST00000637699 CHN2P52757 468 aa16.84■□□□□ 0.29
CLN3-262ENST00000637699 EPS8Q12929 822 aa16.84■□□□□ 0.29
CLN3-262ENST00000637699 SMU1Q2TAY7 513 aa16.84■□□□□ 0.29
CLN3-262ENST00000637699 RNF130Q86XS8 419 aa16.84■□□□□ 0.29
CLN3-262ENST00000637699 WDR60Q8WVS4 1066 aa16.84■□□□□ 0.29
CLN3-262ENST00000637699 TRNT1Q96Q11 434 aaKnown RBP16.84■□□□□ 0.29
CLN3-262ENST00000637699 SNX18Q96RF0 628 aa16.84■□□□□ 0.29
CLN3-262ENST00000637699 TMEM109Q9BVC6 243 aa16.84■□□□□ 0.29
CLN3-262ENST00000637699 ADAM19Q9H013 955 aa16.84■□□□□ 0.29
CLN3-262ENST00000637699 ADPRHL2Q9NX46 363 aa16.84■□□□□ 0.29
CLN3-262ENST00000637699 hCG_2039718K7EN88 272 aa16.83■□□□□ 0.28
CLN3-262ENST00000637699 FAAHO00519 579 aa16.83■□□□□ 0.28
CLN3-262ENST00000637699 LILRA1O75019 489 aa16.83■□□□□ 0.28
CLN3-262ENST00000637699 SNUPNO95149 360 aaKnown RBP16.83■□□□□ 0.28
CLN3-262ENST00000637699 BPGMP07738 259 aa16.83■□□□□ 0.28
CLN3-262ENST00000637699 IL7RP16871 459 aa16.83■□□□□ 0.28
CLN3-262ENST00000637699 GIFP27352 417 aa16.83■□□□□ 0.28
CLN3-262ENST00000637699 BNIP2Q12982 314 aa16.83■□□□□ 0.28
CLN3-262ENST00000637699 GNA13Q14344 377 aa16.83■□□□□ 0.28
CLN3-262ENST00000637699 CASP8Q14790 479 aa16.83■□□□□ 0.28
CLN3-262ENST00000637699 ZSWIM7Q19AV6 140 aa16.83■□□□□ 0.28
CLN3-262ENST00000637699 SPANXN4Q5MJ08 99 aa16.83■□□□□ 0.28
CLN3-262ENST00000637699 MRPL2Q5T653 305 aaKnown RBP16.83■□□□□ 0.28
CLN3-262ENST00000637699 CREB3L2Q70SY1 520 aa16.83■□□□□ 0.28
CLN3-262ENST00000637699 LINGO2Q7L985 606 aa16.83■□□□□ 0.28
CLN3-262ENST00000637699 MREGQ8N565 214 aa16.83■□□□□ 0.28
CLN3-262ENST00000637699 LINC01356Q8N9X3 169 aa16.83■□□□□ 0.28
CLN3-262ENST00000637699 OR4F15Q8NGB8 312 aa16.83■□□□□ 0.28
CLN3-262ENST00000637699 TAPBPLQ9BX59 468 aa16.83■□□□□ 0.28
CLN3-262ENST00000637699 MTHFD2LQ9H903 347 aaPredicted RBP16.83■□□□□ 0.28
CLN3-262ENST00000637699 RLIMQ9NVW2 624 aa16.83■□□□□ 0.28
CLN3-262ENST00000637699 CRNNQ9UBG3 495 aaPredicted RBP16.83■□□□□ 0.28
CLN3-262ENST00000637699 TENM1Q9UKZ4 2725 aa16.83■□□□□ 0.28
CLN3-262ENST00000637699 SH3PXD2BA1X283 911 aa16.82■□□□□ 0.28
CLN3-262ENST00000637699 ITM2AO43736 263 aa16.82■□□□□ 0.28
CLN3-262ENST00000637699 TYROBPO43914 113 aa16.82■□□□□ 0.28
CLN3-262ENST00000637699 ERCC1P07992 297 aaPredicted RBP16.82■□□□□ 0.28
CLN3-262ENST00000637699 TACSTD2P09758 323 aa16.82■□□□□ 0.28
CLN3-262ENST00000637699 GKN3PP0CG01 181 aa16.82■□□□□ 0.28
CLN3-262ENST00000637699 PAX7P23759 505 aa16.82■□□□□ 0.28
CLN3-262ENST00000637699 THBS4P35443 961 aa16.82■□□□□ 0.28
CLN3-262ENST00000637699 HGFACQ04756 655 aa16.82■□□□□ 0.28
CLN3-262ENST00000637699 GSTA3Q16772 222 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms