RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 IGHV1-18A0A0C4DH31 117 aa14.1□□□□□ -0.15
CLN3-246ENST00000636228 FAAHO00519 579 aa14.1□□□□□ -0.15
CLN3-246ENST00000636228 TM9SF1O15321 606 aa14.1□□□□□ -0.15
CLN3-246ENST00000636228 LGI1O95970 557 aa14.1□□□□□ -0.15
CLN3-246ENST00000636228 F12P00748 615 aaPredicted RBP14.1□□□□□ -0.15
CLN3-246ENST00000636228 GPIP06744 558 aa14.1□□□□□ -0.15
CLN3-246ENST00000636228 FAM157CP0CG43 387 aa14.1□□□□□ -0.15
CLN3-246ENST00000636228 ETFAP13804 333 aa14.1□□□□□ -0.15
CLN3-246ENST00000636228 EPHA3P29320 983 aa14.1□□□□□ -0.15
CLN3-246ENST00000636228 ACAA2P42765 397 aaKnown RBP14.1□□□□□ -0.15
CLN3-246ENST00000636228 TUBA1BP68363 451 aa14.1□□□□□ -0.15
CLN3-246ENST00000636228 TUBA4AP68366 448 aa14.1□□□□□ -0.15
CLN3-246ENST00000636228 SRSF2Q01130 221 aaKnown RBP14.1□□□□□ -0.15
CLN3-246ENST00000636228 CARTPTQ16568 116 aa14.1□□□□□ -0.15
CLN3-246ENST00000636228 CYB5R2Q6BCY4 276 aa14.1□□□□□ -0.15
CLN3-246ENST00000636228 OGFOD2Q6N063 350 aa14.1□□□□□ -0.15
CLN3-246ENST00000636228 ZNF836Q6ZNA1 936 aa14.1□□□□□ -0.15
CLN3-246ENST00000636228 IL17RELQ6ZVW7 336 aa14.1□□□□□ -0.15
CLN3-246ENST00000636228 TUBA1AQ71U36 451 aa14.1□□□□□ -0.15
CLN3-246ENST00000636228 CLIP4Q8N3C7 705 aa14.1□□□□□ -0.15
CLN3-246ENST00000636228 OR52P1PQ8NH57 321 aa14.1□□□□□ -0.15
CLN3-246ENST00000636228 TMEM158Q8WZ71 300 aa14.1□□□□□ -0.15
CLN3-246ENST00000636228 TMEM45BQ96B21 275 aa14.1□□□□□ -0.15
CLN3-246ENST00000636228 ADPRHL2Q9NX46 363 aa14.1□□□□□ -0.15
CLN3-246ENST00000636228 CDC42EP3Q9UKI2 254 aa14.1□□□□□ -0.15
CLN3-246ENST00000636228 GPR45Q9Y5Y3 372 aa14.1□□□□□ -0.15
CLN3-246ENST00000636228 MXRA5Q9NR99 2828 aa14.09□□□□□ -0.15
CLN3-246ENST00000636228 AQP7P3A6NL99 342 aa14.09□□□□□ -0.15
CLN3-246ENST00000636228 NR5A2O00482 541 aa14.09□□□□□ -0.15
CLN3-246ENST00000636228 KRT33AO76009 404 aa14.09□□□□□ -0.15
CLN3-246ENST00000636228 WNT11O96014 354 aa14.09□□□□□ -0.15
CLN3-246ENST00000636228 KITP10721 976 aa14.09□□□□□ -0.15
CLN3-246ENST00000636228 USF1P22415 310 aaPredicted RBP14.09□□□□□ -0.15
CLN3-246ENST00000636228 SELENOPP49908 381 aa14.09□□□□□ -0.15
CLN3-246ENST00000636228 ANXA11P50995 505 aaKnown RBP14.09□□□□□ -0.15
CLN3-246ENST00000636228 P2RY4P51582 365 aa14.09□□□□□ -0.15
CLN3-246ENST00000636228 MVDP53602 400 aa14.09□□□□□ -0.15
CLN3-246ENST00000636228 LSM11P83369 360 aaKnown RBP eCLIP14.09□□□□□ -0.15
CLN3-246ENST00000636228 GGTLC2Q14390 218 aa14.09□□□□□ -0.15
CLN3-246ENST00000636228 GSTA3Q16772 222 aa14.09□□□□□ -0.15
CLN3-246ENST00000636228 SWI5Q1ZZU3 235 aa14.09□□□□□ -0.15
CLN3-246ENST00000636228 RPS26P11Q5JNZ5 115 aaPredicted RBP14.09□□□□□ -0.15
CLN3-246ENST00000636228 TMEM225Q6GV28 225 aa14.09□□□□□ -0.15
CLN3-246ENST00000636228 WDR93Q6P2C0 686 aa14.09□□□□□ -0.15
CLN3-246ENST00000636228 KLHL24Q6TFL4 600 aa14.09□□□□□ -0.15
CLN3-246ENST00000636228 LINGO2Q7L985 606 aa14.09□□□□□ -0.15
CLN3-246ENST00000636228 SPATA19Q7Z5L4 167 aa14.09□□□□□ -0.15
CLN3-246ENST00000636228 PEX5LQ8IYB4 626 aa14.09□□□□□ -0.15
CLN3-246ENST00000636228 LRRC34Q8IZ02 419 aa14.09□□□□□ -0.15
CLN3-246ENST00000636228 KDM8Q8N371 416 aa14.09□□□□□ -0.15
CLN3-246ENST00000636228 ANKS4BQ8N8V4 417 aa14.09□□□□□ -0.15
CLN3-246ENST00000636228 ANKRD42Q8N9B4 389 aa14.09□□□□□ -0.15
CLN3-246ENST00000636228 PROX1Q92786 737 aa14.09□□□□□ -0.15
CLN3-246ENST00000636228 C3orf49Q96BT1 292 aa14.09□□□□□ -0.15
CLN3-246ENST00000636228 SORCS2Q96PQ0 1159 aa14.09□□□□□ -0.15
CLN3-246ENST00000636228 SSU72Q9NP77 194 aaKnown RBP14.09□□□□□ -0.15
CLN3-246ENST00000636228 A0A096LPE4 126 aa14.08□□□□□ -0.16
CLN3-246ENST00000636228 A0A1W2PPZ6 126 aa14.08□□□□□ -0.16
CLN3-246ENST00000636228 CDHR4A6H8M9 788 aa14.08□□□□□ -0.16
CLN3-246ENST00000636228 RFXANKO14593 260 aa14.08□□□□□ -0.16
CLN3-246ENST00000636228 UPK3AO75631 287 aa14.08□□□□□ -0.16
CLN3-246ENST00000636228 SNUPNO95149 360 aaKnown RBP14.08□□□□□ -0.16
CLN3-246ENST00000636228 KRT75O95678 551 aa14.08□□□□□ -0.16
CLN3-246ENST00000636228 BCHEP06276 602 aa14.08□□□□□ -0.16
CLN3-246ENST00000636228 BMP4P12644 408 aa14.08□□□□□ -0.16
CLN3-246ENST00000636228 UQCRBP14927 111 aa14.08□□□□□ -0.16
CLN3-246ENST00000636228 CRATP43155 626 aa14.08□□□□□ -0.16
CLN3-246ENST00000636228 HOXC5Q00444 222 aa14.08□□□□□ -0.16
CLN3-246ENST00000636228 TBRG1Q3YBR2 411 aa14.08□□□□□ -0.16
CLN3-246ENST00000636228 GTDC1Q4AE62 458 aa14.08□□□□□ -0.16
CLN3-246ENST00000636228 LIN52Q52LA3 116 aa14.08□□□□□ -0.16
CLN3-246ENST00000636228 NIPAL3Q6P499 406 aa14.08□□□□□ -0.16
CLN3-246ENST00000636228 VHLLQ6RSH7 139 aa14.08□□□□□ -0.16
CLN3-246ENST00000636228 CREB3L2Q70SY1 520 aa14.08□□□□□ -0.16
CLN3-246ENST00000636228 MREGQ8N565 214 aa14.08□□□□□ -0.16
CLN3-246ENST00000636228 POMGNT2Q8NAT1 580 aa14.08□□□□□ -0.16
CLN3-246ENST00000636228 OR1K1Q8NGR3 316 aa14.08□□□□□ -0.16
CLN3-246ENST00000636228 ZBTB18Q99592 522 aa14.08□□□□□ -0.16
CLN3-246ENST00000636228 VRK1Q99986 396 aaPredicted RBP14.08□□□□□ -0.16
CLN3-246ENST00000636228 SF3B5Q9BWJ5 86 aaKnown RBP14.08□□□□□ -0.16
CLN3-246ENST00000636228 TAPBPLQ9BX59 468 aa14.08□□□□□ -0.16
CLN3-246ENST00000636228 SEC61A2Q9H9S3 476 aa14.08□□□□□ -0.16
CLN3-246ENST00000636228 TMEM45AQ9NWC5 275 aa14.08□□□□□ -0.16
CLN3-246ENST00000636228 CHST2Q9Y4C5 530 aa14.08□□□□□ -0.16
CLN3-246ENST00000636228 STAB1Q9NY15 2570 aa14.08□□□□□ -0.16
CLN3-246ENST00000636228 SVEP1Q4LDE5 3571 aa14.08□□□□□ -0.16
CLN3-246ENST00000636228 SLC35F4A4IF30 521 aa14.07□□□□□ -0.16
CLN3-246ENST00000636228 A8MVM7 634 aa14.07□□□□□ -0.16
CLN3-246ENST00000636228 LMX1BO60663 402 aa14.07□□□□□ -0.16
CLN3-246ENST00000636228 NCF2P19878 526 aaPredicted RBP14.07□□□□□ -0.16
CLN3-246ENST00000636228 MAP2K6P52564 334 aa14.07□□□□□ -0.16
CLN3-246ENST00000636228 COPZ1P61923 177 aa14.07□□□□□ -0.16
CLN3-246ENST00000636228 CEP85LQ5SZL2 805 aa14.07□□□□□ -0.16
CLN3-246ENST00000636228 C1orf140Q5VVS0 124 aa14.07□□□□□ -0.16
CLN3-246ENST00000636228 ATG16L1Q676U5 607 aa14.07□□□□□ -0.16
CLN3-246ENST00000636228 NXNQ6DKJ4 435 aa14.07□□□□□ -0.16
CLN3-246ENST00000636228 WBP2NLQ6ICG8 309 aa14.07□□□□□ -0.16
CLN3-246ENST00000636228 EPHX4Q8IUS5 362 aa14.07□□□□□ -0.16
CLN3-246ENST00000636228 ZNF440Q8IYI8 595 aa14.07□□□□□ -0.16
CLN3-246ENST00000636228 BCL2L2Q92843 193 aaPredicted RBP14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms