RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 LBPP18428 481 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 FUT1P19526 365 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 CNR1P21554 472 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 MDKP21741 143 aaPredicted RBP3.75□□□□□ -1.81
LINC00540-201ENST00000611481 AZGP1P25311 298 aaKnown RBP3.75□□□□□ -1.81
LINC00540-201ENST00000611481 PSMB4P28070 264 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 NMBRP28336 390 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 SDC4P31431 198 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 USP8P40818 1118 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 IER3P46695 156 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 GPR12P47775 334 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 NPBWR1P48145 328 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 HNRNPFP52597 415 aaKnown RBP3.75□□□□□ -1.81
LINC00540-201ENST00000611481 OR4D2P58180 307 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 PPP1R8Q12972 351 aaKnown RBP3.75□□□□□ -1.81
LINC00540-201ENST00000611481 DDX39BQ13838 428 aaKnown RBP3.75□□□□□ -1.81
LINC00540-201ENST00000611481 KIR2DS3Q14952 304 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 C2orf68Q2NKX9 166 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 DCAF12L2Q5VW00 463 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 SIGIRRQ6IA17 410 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 ADAM5Q6NVV9 412 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 CES3Q6UWW8 571 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 LRIG3Q6UXM1 1119 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 DLEU7Q6UYE1 221 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 PQLC2Q6ZP29 291 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 C17orf107Q6ZR85 190 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 KIAA1328Q86T90 577 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 KLHDC8AQ8IYD2 350 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 C2orf73Q8N5S3 287 aaPredicted RBP3.75□□□□□ -1.81
LINC00540-201ENST00000611481 NPWQ8N729 165 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 L3MBTL4Q8NA19 623 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 FAM47BQ8NA70 645 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 OR5AR1Q8NGP9 310 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 NEIL3Q8TAT5 605 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 WDR20Q8TBZ3 569 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 OTULINQ96BN8 352 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 SPDL1Q96EA4 605 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 C11orf24Q96F05 449 aaPredicted RBP3.75□□□□□ -1.81
LINC00540-201ENST00000611481 ZNF570Q96NI8 536 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 ZNF599Q96NL3 588 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 PCDHB18PQ96TA0 734 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 ZBTB18Q99592 522 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 GPA33Q99795 319 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 SLC6A7Q99884 636 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 ASCL2Q99929 193 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 CCDC77Q9BR77 488 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 SUCNR1Q9BXA5 334 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 TDRD1Q9BXT4 1180 aaKnown RBP3.75□□□□□ -1.81
LINC00540-201ENST00000611481 OPN3Q9H1Y3 402 aaPredicted RBP3.75□□□□□ -1.81
LINC00540-201ENST00000611481 CALHM2Q9HA72 323 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 UGT1A8Q9HAW9 530 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 PCDH9Q9HC56 1237 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 NT5MQ9NPB1 228 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 ADAP2Q9NPF8 381 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 GLRX2Q9NS18 164 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 EXOC1Q9NV70 894 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 SMPD3Q9NY59 655 aaPredicted RBP3.75□□□□□ -1.81
LINC00540-201ENST00000611481 OR6C2Q9NZP2 312 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 CFAP45Q9UL16 551 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 FZD10Q9ULW2 581 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 GPR132Q9UNW8 380 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 RNF115Q9Y4L5 304 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 MAB21L2Q9Y586 359 aa3.75□□□□□ -1.81
LINC00540-201ENST00000611481 A0A1W2PPW3 197 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 MACROD2A1Z1Q3 448 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 LRP5LA4QPB2 252 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 GAGE12JA6NER3 117 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 DUXAA6NLW8 204 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 E9PBE3 544 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 H0YIV9 168 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 RHODO00212 210 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 VCYO14598 125 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 LY6HO94772 140 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 LCKP06239 509 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 CSF3P09919 207 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 PIRTP0C851 137 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 UGT1A6P19224 532 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 MSH3P20585 1137 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 PCMT1P22061 227 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 PKLRP30613 574 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 GABRA5P31644 462 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 SLCO1A2P46721 670 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 SLC6A12P48065 614 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 SSR4P51571 173 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 KRTAP10-12P60413 245 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 RPL26P61254 145 aaKnown RBP3.74□□□□□ -1.81
LINC00540-201ENST00000611481 SNTB2Q13425 540 aaKnown RBP3.74□□□□□ -1.81
LINC00540-201ENST00000611481 RCAN2Q14206 197 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 ABRAXAS2Q15018 415 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 RAB35Q15286 201 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 ZMYND11Q15326 602 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 NSDHLQ15738 373 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 CARTPTQ16568 116 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 KCTD21Q4G0X4 260 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 SYTL3Q4VX76 610 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 ESCO2Q56NI9 601 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 CCNYL2Q5T2Q4 361 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 CASC10Q5T4H9 136 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 PRR27Q6MZM9 219 aa3.74□□□□□ -1.81
LINC00540-201ENST00000611481 SCYL2Q6P3W7 929 aa3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms