RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 OR2T4Q8NH00 348 aa14.06□□□□□ -0.16
UPF1-204ENST00000596842 RAB7BQ96AH8 199 aa14.06□□□□□ -0.16
UPF1-204ENST00000596842 ZNF707Q96C28 371 aaPredicted RBP14.06□□□□□ -0.16
UPF1-204ENST00000596842 RASD2Q96D21 266 aa14.06□□□□□ -0.16
UPF1-204ENST00000596842 NXPE2Q96DL1 559 aa14.06□□□□□ -0.16
UPF1-204ENST00000596842 SCMH1Q96GD3 660 aa14.06□□□□□ -0.16
UPF1-204ENST00000596842 TOX2Q96NM4 488 aa14.06□□□□□ -0.16
UPF1-204ENST00000596842 CCDC3Q9BQI4 270 aa14.06□□□□□ -0.16
UPF1-204ENST00000596842 GINS4Q9BRT9 223 aa14.06□□□□□ -0.16
UPF1-204ENST00000596842 RAB11FIP5Q9BXF6 653 aa14.06□□□□□ -0.16
UPF1-204ENST00000596842 C20orf85Q9H1P6 137 aa14.06□□□□□ -0.16
UPF1-204ENST00000596842 LYARQ9NX58 379 aaKnown RBP14.06□□□□□ -0.16
UPF1-204ENST00000596842 IKZF2Q9UKS7 526 aa14.06□□□□□ -0.16
UPF1-204ENST00000596842 FKBP7Q9Y680 259 aa14.06□□□□□ -0.16
UPF1-204ENST00000596842 TFP02787 698 aa14.06□□□□□ -0.16
UPF1-204ENST00000596842 DBIP07108 87 aaKnown RBP14.06□□□□□ -0.16
UPF1-204ENST00000596842 UCHL1P09936 223 aa14.06□□□□□ -0.16
UPF1-204ENST00000596842 ADH7P40394 386 aa14.06□□□□□ -0.16
UPF1-204ENST00000596842 GRK1Q15835 563 aa14.06□□□□□ -0.16
UPF1-204ENST00000596842 RERGQ96A58 199 aaPredicted RBP14.06□□□□□ -0.16
UPF1-204ENST00000596842 PELI1Q96FA3 418 aa14.06□□□□□ -0.16
UPF1-204ENST00000596842 ELMOD3Q96FG2 381 aa14.06□□□□□ -0.16
UPF1-204ENST00000596842 TEX101Q9BY14 249 aa14.06□□□□□ -0.16
UPF1-204ENST00000596842 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP14.06□□□□□ -0.16
UPF1-204ENST00000596842 CHMP1AQ9HD42 196 aaPredicted RBP14.06□□□□□ -0.16
UPF1-204ENST00000596842 B3GNT2Q9NY97 397 aa14.06□□□□□ -0.16
UPF1-204ENST00000596842 PRSS44E7EML9 344 aa14.05□□□□□ -0.16
UPF1-204ENST00000596842 KLF4O43474 513 aa14.05□□□□□ -0.16
UPF1-204ENST00000596842 PLPP2O43688 288 aa14.05□□□□□ -0.16
UPF1-204ENST00000596842 UBL3O95164 117 aa14.05□□□□□ -0.16
UPF1-204ENST00000596842 NID1P14543 1247 aa14.05□□□□□ -0.16
UPF1-204ENST00000596842 TYRP1P17643 537 aa14.05□□□□□ -0.16
UPF1-204ENST00000596842 EMDP50402 254 aa14.05□□□□□ -0.16
UPF1-204ENST00000596842 EEF1A1P68104 462 aaKnown RBP14.05□□□□□ -0.16
UPF1-204ENST00000596842 GSG1Q2KHT4 349 aa14.05□□□□□ -0.16
UPF1-204ENST00000596842 TMEM255AQ5JRV8 349 aa14.05□□□□□ -0.16
UPF1-204ENST00000596842 NANPQ8TBE9 248 aa14.05□□□□□ -0.16
UPF1-204ENST00000596842 GAL3ST3Q96A11 431 aa14.05□□□□□ -0.16
UPF1-204ENST00000596842 WDR89Q96FK6 387 aaPredicted RBP14.05□□□□□ -0.16
UPF1-204ENST00000596842 TMEM168Q9H0V1 697 aa14.05□□□□□ -0.16
UPF1-204ENST00000596842 ANKRD19PQ9H560 264 aa14.05□□□□□ -0.16
UPF1-204ENST00000596842 SRA1Q9HD15 236 aaKnown RBP14.05□□□□□ -0.16
UPF1-204ENST00000596842 A0A0G2JK05 382 aa14.05□□□□□ -0.16
UPF1-204ENST00000596842 A0A1B0GTH9 108 aa14.05□□□□□ -0.16
UPF1-204ENST00000596842 H7C1C5 153 aa14.05□□□□□ -0.16
UPF1-204ENST00000596842 ARL6IP5O75915 188 aa14.05□□□□□ -0.16
UPF1-204ENST00000596842 MAS1P04201 325 aa14.05□□□□□ -0.16
UPF1-204ENST00000596842 LCN6P62502 163 aa14.05□□□□□ -0.16
UPF1-204ENST00000596842 PITPNAQ00169 270 aa14.05□□□□□ -0.16
UPF1-204ENST00000596842 KCNAB1Q14722 419 aa14.05□□□□□ -0.16
UPF1-204ENST00000596842 PON3Q15166 354 aa14.05□□□□□ -0.16
UPF1-204ENST00000596842 ARHGAP11BQ3KRB8 267 aa14.05□□□□□ -0.16
UPF1-204ENST00000596842 BRIX1Q8TDN6 353 aaKnown RBP14.05□□□□□ -0.16
UPF1-204ENST00000596842 NR4A3Q92570 626 aa14.05□□□□□ -0.16
UPF1-204ENST00000596842 PGLYRP3Q96LB9 341 aa14.05□□□□□ -0.16
UPF1-204ENST00000596842 APOOQ9BUR5 198 aa14.05□□□□□ -0.16
UPF1-204ENST00000596842 PITHD1Q9GZP4 211 aaPredicted RBP14.05□□□□□ -0.16
UPF1-204ENST00000596842 RNGTTO60942 597 aaKnown RBP14.05□□□□□ -0.16
UPF1-204ENST00000596842 IGFALSP35858 605 aa14.05□□□□□ -0.16
UPF1-204ENST00000596842 RAD52P43351 418 aa14.05□□□□□ -0.16
UPF1-204ENST00000596842 FBXO42Q6P3S6 717 aa14.05□□□□□ -0.16
UPF1-204ENST00000596842 OR52B4Q8NGK2 314 aa14.05□□□□□ -0.16
UPF1-204ENST00000596842 OR2M2Q96R28 347 aa14.05□□□□□ -0.16
UPF1-204ENST00000596842 HDAC8Q9BY41 377 aa14.05□□□□□ -0.16
UPF1-204ENST00000596842 LMAN2LQ9H0V9 348 aa14.05□□□□□ -0.16
UPF1-204ENST00000596842 DAPP1Q9UN19 280 aa14.05□□□□□ -0.16
UPF1-204ENST00000596842 MCIDASD6RGH6 385 aa14.04□□□□□ -0.16
UPF1-204ENST00000596842 ADAM11O75078 769 aa14.04□□□□□ -0.16
UPF1-204ENST00000596842 MPC2O95563 127 aa14.04□□□□□ -0.16
UPF1-204ENST00000596842 NRG3P56975 720 aa14.04□□□□□ -0.16
UPF1-204ENST00000596842 SIRPAP78324 504 aa14.04□□□□□ -0.16
UPF1-204ENST00000596842 C11orf88Q6PI97 169 aa14.04□□□□□ -0.16
UPF1-204ENST00000596842 RTL4Q6ZR62 310 aa14.04□□□□□ -0.16
UPF1-204ENST00000596842 MS4A15Q8N5U1 240 aa14.04□□□□□ -0.16
UPF1-204ENST00000596842 OR52R1Q8NGF1 315 aa14.04□□□□□ -0.16
UPF1-204ENST00000596842 OR51Q1Q8NH59 317 aa14.04□□□□□ -0.16
UPF1-204ENST00000596842 ZPLD1Q8TCW7 415 aa14.04□□□□□ -0.16
UPF1-204ENST00000596842 ZNRF4Q8WWF5 429 aa14.04□□□□□ -0.16
UPF1-204ENST00000596842 OR10H1Q9Y4A9 318 aa14.04□□□□□ -0.16
UPF1-204ENST00000596842 PTBP1P26599 531 aaKnown RBP eCLIP14.04□□□□□ -0.16
UPF1-204ENST00000596842 SLC6A6P31641 620 aa14.04□□□□□ -0.16
UPF1-204ENST00000596842 NUDT1P36639 197 aa14.04□□□□□ -0.16
UPF1-204ENST00000596842 C19orf57Q0VDD7 668 aa14.04□□□□□ -0.16
UPF1-204ENST00000596842 DUSP8Q13202 625 aa14.04□□□□□ -0.16
UPF1-204ENST00000596842 SLC35F2Q8IXU6 374 aa14.04□□□□□ -0.16
UPF1-204ENST00000596842 ADAMTS14Q8WXS8 1223 aa14.04□□□□□ -0.16
UPF1-204ENST00000596842 KCTD12Q96CX2 325 aaKnown RBP14.04□□□□□ -0.16
UPF1-204ENST00000596842 C10orf90Q96M02 699 aa14.04□□□□□ -0.16
UPF1-204ENST00000596842 CNN2Q99439 309 aaKnown RBP14.04□□□□□ -0.16
UPF1-204ENST00000596842 TMEM138Q9NPI0 162 aa14.04□□□□□ -0.16
UPF1-204ENST00000596842 CD93Q9NPY3 652 aa14.04□□□□□ -0.16
UPF1-204ENST00000596842 MAB21L2Q9Y586 359 aa14.04□□□□□ -0.16
UPF1-204ENST00000596842 SPACA6W5XKT8 324 aa14.04□□□□□ -0.16
UPF1-204ENST00000596842 TVP23AA6NH52 213 aa14.04□□□□□ -0.16
UPF1-204ENST00000596842 ZNF98A6NK75 572 aa14.04□□□□□ -0.16
UPF1-204ENST00000596842 VASPP50552 380 aaPredicted RBP14.04□□□□□ -0.16
UPF1-204ENST00000596842 TAS2R43P59537 309 aa14.04□□□□□ -0.16
UPF1-204ENST00000596842 ACSM1Q08AH1 577 aa14.04□□□□□ -0.16
UPF1-204ENST00000596842 TMEM81Q6P7N7 255 aa14.04□□□□□ -0.16
UPF1-204ENST00000596842 ALKAL2Q6UX46 152 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms