RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 TBCEQ15813 527 aaPredicted RBP9.52□□□□□ -0.89
SS18-217ENST00000580958 TMEM44Q2T9K0 475 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 PLPPR5Q32ZL2 321 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 SLC25A53Q5H9E4 307 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 C1orf140Q5VVS0 124 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 SLC22A10Q63ZE4 541 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 JMJD6Q6NYC1 403 aaPredicted RBP9.52□□□□□ -0.89
SS18-217ENST00000580958 PLBD1Q6P4A8 553 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 ARHGAP11AQ6P4F7 1023 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 DPY19L2P2Q6ZN68 376 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 TMPRSS7Q7RTY8 843 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 NANOGNBQ7Z5D8 188 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 ALPK2Q86TB3 2170 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 DTX1Q86Y01 620 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 BEST3Q8N1M1 668 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 WDSUB1Q8N9V3 476 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 LRRC75AQ8NAA5 344 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 OR52I1Q8NGK6 324 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 C9orf43Q8TAL5 461 aaPredicted RBP9.52□□□□□ -0.89
SS18-217ENST00000580958 PAQR8Q8TEZ7 354 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 PSMF1Q92530 271 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 RELTQ969Z4 430 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 KIAA1143Q96AT1 154 aaPredicted RBP9.52□□□□□ -0.89
SS18-217ENST00000580958 SLC25A36Q96CQ1 311 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 DGCR14Q96DF8 476 aaKnown RBP9.52□□□□□ -0.89
SS18-217ENST00000580958 LGALS12Q96DT0 336 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 RNFT2Q96EX2 444 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 TMEM80Q96HE8 168 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 PTDSS2Q9BVG9 487 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 OR11A1Q9GZK7 315 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 FKRPQ9H9S5 495 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 PROK2Q9HC23 129 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 CMC2Q9NRP2 79 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 CHRNA9Q9UGM1 479 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 KLHL21Q9UJP4 597 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 ZNF229Q9UJW7 825 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 HIF3AQ9Y2N7 669 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 IER3IP1Q9Y5U9 82 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 COMMD3-BMI1R4GMX3 469 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 PTPRZ1P23471 2315 aaPredicted RBP9.51□□□□□ -0.89
SS18-217ENST00000580958 ETV2O00321 342 aaPredicted RBP9.51□□□□□ -0.89
SS18-217ENST00000580958 SLC30A4O14863 429 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 APOL3O95236 402 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 AHSA1O95433 338 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 PTHP01270 115 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 HIST1H2ABP04908 130 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 ADORA3P0DMS8 318 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 ZNF3P17036 446 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 NOS3P29474 1203 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 UQCRC1P31930 480 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 APOBEC1P41238 236 aaKnown RBP9.51□□□□□ -0.89
SS18-217ENST00000580958 CTXN1P60606 82 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 PRPS1P60891 318 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 RPL18Q07020 188 aaKnown RBP9.51□□□□□ -0.89
SS18-217ENST00000580958 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.51□□□□□ -0.89
SS18-217ENST00000580958 ITGADQ13349 1161 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 TUBA3CQ13748 450 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 CRMP1Q14194 572 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 KLHL22Q53GT1 634 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 ACER2Q5QJU3 275 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 DCAF10Q5QP82 559 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 ATP1A1-AS1Q5TC04 95 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 UBE2UQ5VVX9 321 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 GPR107Q5VW38 600 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 NXNL2Q5VZ03 156 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 NIPAL3Q6P499 406 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 IGF2-ASQ6U949 168 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 C5orf46Q6UWT4 87 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 HIST3H2AQ7L7L0 130 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 MAMDC2Q7Z304 686 aaPredicted RBP9.51□□□□□ -0.89
SS18-217ENST00000580958 VASH2Q86V25 355 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 PLCZ1Q86YW0 608 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 FAM98AQ8NCA5 519 aaKnown RBP9.51□□□□□ -0.89
SS18-217ENST00000580958 SLC37A3Q8NCC5 494 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 ATP6V1C2Q8NEY4 427 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 OR52E2Q8NGJ4 325 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 OR5M1Q8NGP8 315 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 OR4K13Q8NH42 304 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 HIST1H2ACQ93077 130 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 RFKQ969G6 155 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 NTNG2Q96CW9 530 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 NMD3Q96D46 503 aaKnown RBP9.51□□□□□ -0.89
SS18-217ENST00000580958 C1GALT1C1Q96EU7 318 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 MRGPRX4Q96LA9 322 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 SGCZQ96LD1 299 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 FRMD6Q96NE9 622 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 IP6K3Q96PC2 410 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 GPX7Q96SL4 187 aaPredicted RBP9.51□□□□□ -0.89
SS18-217ENST00000580958 KATNB1Q9BVA0 655 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 HCAR1Q9BXC0 346 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 YIPF3Q9GZM5 350 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 NAA50Q9GZZ1 169 aaKnown RBP9.51□□□□□ -0.89
SS18-217ENST00000580958 FN3KQ9H479 309 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 FGF20Q9NP95 211 aaPredicted RBP9.51□□□□□ -0.89
SS18-217ENST00000580958 KLHL1Q9NR64 748 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 ANKRD10Q9NXR5 420 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 H2AFY2Q9P0M6 372 aaPredicted RBP9.51□□□□□ -0.89
SS18-217ENST00000580958 WARS2Q9UGM6 360 aaKnown RBP9.51□□□□□ -0.89
SS18-217ENST00000580958 RSL24D1Q9UHA3 163 aaKnown RBP9.51□□□□□ -0.89
SS18-217ENST00000580958 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms