RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 ZNF346Q9UL40 294 aaKnown RBP15.41■□□□□ 0.06
CLK3-227ENST00000570296 EPPK1P58107 5090 aaKnown RBP15.41■□□□□ 0.06
CLK3-227ENST00000570296 COL7A1Q02388 2944 aa15.4■□□□□ 0.06
CLK3-227ENST00000570296 A8MT66 165 aa15.4■□□□□ 0.06
CLK3-227ENST00000570296 ENO1P06733 434 aaKnown RBP15.4■□□□□ 0.06
CLK3-227ENST00000570296 MTNR1AP48039 350 aa15.4■□□□□ 0.06
CLK3-227ENST00000570296 NPRL3Q12980 569 aa15.4■□□□□ 0.06
CLK3-227ENST00000570296 MAD2L1BPQ15013 274 aaPredicted RBP15.4■□□□□ 0.06
CLK3-227ENST00000570296 TAF9Q16594 264 aa15.4■□□□□ 0.06
CLK3-227ENST00000570296 ANKRD26P1Q6NSI1 321 aa15.4■□□□□ 0.06
CLK3-227ENST00000570296 GRINAQ7Z429 371 aa15.4■□□□□ 0.06
CLK3-227ENST00000570296 SPC24Q8NBT2 197 aa15.4■□□□□ 0.06
CLK3-227ENST00000570296 DEFB108BQ8NET1 73 aa15.4■□□□□ 0.06
CLK3-227ENST00000570296 FAM120BQ96EK7 910 aaKnown RBP15.4■□□□□ 0.06
CLK3-227ENST00000570296 MRPL57Q9BQC6 102 aaKnown RBP15.4■□□□□ 0.06
CLK3-227ENST00000570296 NMUR2Q9GZQ4 415 aa15.4■□□□□ 0.06
CLK3-227ENST00000570296 ZCCHC3Q9NUD5 404 aaKnown RBP15.4■□□□□ 0.06
CLK3-227ENST00000570296 KLHL21Q9UJP4 597 aa15.4■□□□□ 0.06
CLK3-227ENST00000570296 PCDHGB4Q9UN71 923 aa15.4■□□□□ 0.06
CLK3-227ENST00000570296 SNX24Q9Y343 169 aa15.4■□□□□ 0.06
CLK3-227ENST00000570296 TBX19O60806 448 aa15.39■□□□□ 0.05
CLK3-227ENST00000570296 TSPAN15O95858 294 aa15.39■□□□□ 0.05
CLK3-227ENST00000570296 NGFP01138 241 aa15.39■□□□□ 0.05
CLK3-227ENST00000570296 UBTFL6P0CB48 400 aaPredicted RBP15.39■□□□□ 0.05
CLK3-227ENST00000570296 GLRXP35754 106 aa15.39■□□□□ 0.05
CLK3-227ENST00000570296 RAD52P43351 418 aa15.39■□□□□ 0.05
CLK3-227ENST00000570296 LCN2P80188 198 aa15.39■□□□□ 0.05
CLK3-227ENST00000570296 HLXQ14774 488 aaPredicted RBP15.39■□□□□ 0.05
CLK3-227ENST00000570296 NOXRED1Q6NXP6 359 aa15.39■□□□□ 0.05
CLK3-227ENST00000570296 ADAMTS15Q8TE58 950 aa15.39■□□□□ 0.05
CLK3-227ENST00000570296 EGLN2Q96KS0 407 aa15.39■□□□□ 0.05
CLK3-227ENST00000570296 ACTRT3Q9BYD9 372 aa15.39■□□□□ 0.05
CLK3-227ENST00000570296 MRPL46Q9H2W6 279 aaKnown RBP15.39■□□□□ 0.05
CLK3-227ENST00000570296 STK38LQ9Y2H1 464 aa15.39■□□□□ 0.05
CLK3-227ENST00000570296 CLPSL1A2RUU4 121 aa15.38■□□□□ 0.05
CLK3-227ENST00000570296 CDC14BO60729 498 aa15.38■□□□□ 0.05
CLK3-227ENST00000570296 SUPT7LO94864 414 aa15.38■□□□□ 0.05
CLK3-227ENST00000570296 NDUFA7O95182 113 aa15.38■□□□□ 0.05
CLK3-227ENST00000570296 CSTAP01040 98 aa15.38■□□□□ 0.05
CLK3-227ENST00000570296 KRT16P08779 473 aa15.38■□□□□ 0.05
CLK3-227ENST00000570296 NAT2P11245 290 aa15.38■□□□□ 0.05
CLK3-227ENST00000570296 IMPDH2P12268 514 aa15.38■□□□□ 0.05
CLK3-227ENST00000570296 RPS23P62266 143 aaKnown RBP15.38■□□□□ 0.05
CLK3-227ENST00000570296 TEKQ02763 1124 aa15.38■□□□□ 0.05
CLK3-227ENST00000570296 ZNF385BQ569K4 471 aa15.38■□□□□ 0.05
CLK3-227ENST00000570296 LINGO2Q7L985 606 aa15.38■□□□□ 0.05
CLK3-227ENST00000570296 ZNF563Q8TA94 476 aa15.38■□□□□ 0.05
CLK3-227ENST00000570296 PMM1Q92871 262 aa15.38■□□□□ 0.05
CLK3-227ENST00000570296 PPCDCQ96CD2 204 aa15.38■□□□□ 0.05
CLK3-227ENST00000570296 MS4A7Q9GZW8 240 aaPredicted RBP15.38■□□□□ 0.05
CLK3-227ENST00000570296 SNX12Q9UMY4 172 aa15.38■□□□□ 0.05
CLK3-227ENST00000570296 WIPI2Q9Y4P8 454 aa15.38■□□□□ 0.05
CLK3-227ENST00000570296 TIMM22Q9Y584 194 aa15.38■□□□□ 0.05
CLK3-227ENST00000570296 NOX1Q9Y5S8 564 aa15.38■□□□□ 0.05
CLK3-227ENST00000570296 AUP1Q9Y679 476 aa15.38■□□□□ 0.05
CLK3-227ENST00000570296 NUP214P35658 2090 aaPredicted RBP15.37■□□□□ 0.05
CLK3-227ENST00000570296 FAM181BA6NEQ2 426 aa15.37■□□□□ 0.05
CLK3-227ENST00000570296 CLDN25C9JDP6 229 aa15.37■□□□□ 0.05
CLK3-227ENST00000570296 NPIPB8E9PQR5 432 aa15.37■□□□□ 0.05
CLK3-227ENST00000570296 ZNF208O43345 1280 aa15.37■□□□□ 0.05
CLK3-227ENST00000570296 BCKDHAP12694 445 aa15.37■□□□□ 0.05
CLK3-227ENST00000570296 SELEP16581 610 aa15.37■□□□□ 0.05
CLK3-227ENST00000570296 CRYBB2P43320 205 aa15.37■□□□□ 0.05
CLK3-227ENST00000570296 PKNOX1P55347 436 aa15.37■□□□□ 0.05
CLK3-227ENST00000570296 KRTAP10-3P60369 221 aa15.37■□□□□ 0.05
CLK3-227ENST00000570296 ZNF141Q15928 474 aa15.37■□□□□ 0.05
CLK3-227ENST00000570296 IMPG1Q17R60 797 aa15.37■□□□□ 0.05
CLK3-227ENST00000570296 ATP6AP1LQ52LC2 224 aa15.37■□□□□ 0.05
CLK3-227ENST00000570296 UNC50Q53HI1 259 aa15.37■□□□□ 0.05
CLK3-227ENST00000570296 C9orf139Q6ZV77 190 aa15.37■□□□□ 0.05
CLK3-227ENST00000570296 EIF3MQ7L2H7 374 aaKnown RBP15.37■□□□□ 0.05
CLK3-227ENST00000570296 CCDC36Q8IYA8 594 aa15.37■□□□□ 0.05
CLK3-227ENST00000570296 ANKK1Q8NFD2 765 aa15.37■□□□□ 0.05
CLK3-227ENST00000570296 FAM110DQ8TAY7 271 aaPredicted RBP15.37■□□□□ 0.05
CLK3-227ENST00000570296 DDIT4LQ96D03 193 aa15.37■□□□□ 0.05
CLK3-227ENST00000570296 TIMD4Q96H15 378 aa15.37■□□□□ 0.05
CLK3-227ENST00000570296 LINC00470Q9BZP3 86 aa15.37■□□□□ 0.05
CLK3-227ENST00000570296 MYEF2Q9P2K5 600 aaKnown RBP15.37■□□□□ 0.05
CLK3-227ENST00000570296 PURGQ9UJV8 347 aaKnown RBP15.37■□□□□ 0.05
CLK3-227ENST00000570296 KCNE3Q9Y6H6 103 aa15.37■□□□□ 0.05
CLK3-227ENST00000570296 DNAH3Q8TD57 4116 aa15.36■□□□□ 0.05
CLK3-227ENST00000570296 TMEM229AB2RXF0 380 aa15.36■□□□□ 0.05
CLK3-227ENST00000570296 G3V4G9 280 aa15.36■□□□□ 0.05
CLK3-227ENST00000570296 PLXNB1O43157 2135 aa15.36■□□□□ 0.05
CLK3-227ENST00000570296 TRAF3IP2O43734 574 aaPredicted RBP15.36■□□□□ 0.05
CLK3-227ENST00000570296 FOXH1O75593 365 aa15.36■□□□□ 0.05
CLK3-227ENST00000570296 RSL1D1O76021 490 aaKnown RBP15.36■□□□□ 0.05
CLK3-227ENST00000570296 CRYBA1P05813 215 aa15.36■□□□□ 0.05
CLK3-227ENST00000570296 MAGEA12P43365 314 aa15.36■□□□□ 0.05
CLK3-227ENST00000570296 MAGEB1P43366 347 aa15.36■□□□□ 0.05
CLK3-227ENST00000570296 SELENOPP49908 381 aa15.36■□□□□ 0.05
CLK3-227ENST00000570296 CALCOCO2Q13137 446 aa15.36■□□□□ 0.05
CLK3-227ENST00000570296 PCGF3Q3KNV8 242 aa15.36■□□□□ 0.05
CLK3-227ENST00000570296 ZNF678Q5SXM1 525 aa15.36■□□□□ 0.05
CLK3-227ENST00000570296 MDP1Q86V88 176 aa15.36■□□□□ 0.05
CLK3-227ENST00000570296 LRP11Q86VZ4 500 aa15.36■□□□□ 0.05
CLK3-227ENST00000570296 GLB1L3Q8NCI6 653 aaPredicted RBP15.36■□□□□ 0.05
CLK3-227ENST00000570296 FAM71CQ8NEG0 241 aa15.36■□□□□ 0.05
CLK3-227ENST00000570296 RAB1CQ92928 201 aa15.36■□□□□ 0.05
CLK3-227ENST00000570296 REEP4Q9H6H4 257 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms