RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 TET2Q6N021 2002 aaPredicted RBP1.45□□□□□ -2.18
VPS35-207ENST00000568191 FRMPD4Q14CM0 1322 aa1.44□□□□□ -2.18
VPS35-207ENST00000568191 ATP10DQ9P241 1426 aa1.44□□□□□ -2.18
VPS35-207ENST00000568191 IDSB3KWA1 339 aa1.44□□□□□ -2.18
VPS35-207ENST00000568191 F8WDY8 70 aa1.44□□□□□ -2.18
VPS35-207ENST00000568191 HIP1O00291 1037 aa1.44□□□□□ -2.18
VPS35-207ENST00000568191 SS18L1O75177 396 aaPredicted RBP1.44□□□□□ -2.18
VPS35-207ENST00000568191 STAMBPO95630 424 aa1.44□□□□□ -2.18
VPS35-207ENST00000568191 PPIAL4GP0DN37 164 aa1.44□□□□□ -2.18
VPS35-207ENST00000568191 NPR2P20594 1047 aa1.44□□□□□ -2.18
VPS35-207ENST00000568191 TBXA2RP21731 343 aa1.44□□□□□ -2.18
VPS35-207ENST00000568191 KIF5BP33176 963 aa1.44□□□□□ -2.18
VPS35-207ENST00000568191 UBE2AP49459 152 aa1.44□□□□□ -2.18
VPS35-207ENST00000568191 EFNB2P52799 333 aa1.44□□□□□ -2.18
VPS35-207ENST00000568191 PLA2G16P53816 162 aa1.44□□□□□ -2.18
VPS35-207ENST00000568191 GMFBP60983 142 aa1.44□□□□□ -2.18
VPS35-207ENST00000568191 RIPK1Q13546 671 aa1.44□□□□□ -2.18
VPS35-207ENST00000568191 PRSS8Q16651 343 aa1.44□□□□□ -2.18
VPS35-207ENST00000568191 TRIM16LQ309B1 348 aa1.44□□□□□ -2.18
VPS35-207ENST00000568191 USH1GQ495M9 461 aa1.44□□□□□ -2.18
VPS35-207ENST00000568191 PARP10Q53GL7 1025 aa1.44□□□□□ -2.18
VPS35-207ENST00000568191 KLF17Q5JT82 389 aaPredicted RBP1.44□□□□□ -2.18
VPS35-207ENST00000568191 OR2G6Q5TZ20 316 aa1.44□□□□□ -2.18
VPS35-207ENST00000568191 KCNIP4Q6PIL6 250 aa1.44□□□□□ -2.18
VPS35-207ENST00000568191 ZNF621Q6ZSS3 439 aa1.44□□□□□ -2.18
VPS35-207ENST00000568191 C12orf56Q8IXR9 622 aa1.44□□□□□ -2.18
VPS35-207ENST00000568191 FTMTQ8N4E7 242 aa1.44□□□□□ -2.18
VPS35-207ENST00000568191 HDDC3Q8N4P3 179 aa1.44□□□□□ -2.18
VPS35-207ENST00000568191 CNNM3Q8NE01 707 aa1.44□□□□□ -2.18
VPS35-207ENST00000568191 NPBQ8NG41 125 aa1.44□□□□□ -2.18
VPS35-207ENST00000568191 OR9G1Q8NH87 305 aa1.44□□□□□ -2.18
VPS35-207ENST00000568191 ST8SIA1Q92185 356 aa1.44□□□□□ -2.18
VPS35-207ENST00000568191 MRPS31Q92665 395 aaKnown RBP1.44□□□□□ -2.18
VPS35-207ENST00000568191 TAAR1Q96RJ0 339 aa1.44□□□□□ -2.18
VPS35-207ENST00000568191 PLA2G12AQ9BZM1 189 aa1.44□□□□□ -2.18
VPS35-207ENST00000568191 NXF5Q9H1B4 397 aaKnown RBP1.44□□□□□ -2.18
VPS35-207ENST00000568191 CDC42EP4Q9H3Q1 356 aaKnown RBP1.44□□□□□ -2.18
VPS35-207ENST00000568191 RAB18Q9NP72 206 aa1.44□□□□□ -2.18
VPS35-207ENST00000568191 SMPD3Q9NY59 655 aaPredicted RBP1.44□□□□□ -2.18
VPS35-207ENST00000568191 GNG12Q9UBI6 72 aa1.44□□□□□ -2.18
VPS35-207ENST00000568191 NUP214P35658 2090 aaPredicted RBP1.44□□□□□ -2.18
VPS35-207ENST00000568191 CARMIL1Q5VZK9 1371 aa1.44□□□□□ -2.18
VPS35-207ENST00000568191 CARMIL3Q8ND23 1372 aa1.44□□□□□ -2.18
VPS35-207ENST00000568191 SH3TC1Q8TE82 1336 aa1.43□□□□□ -2.18
VPS35-207ENST00000568191 FRMPD3Q5JV73 1810 aa1.43□□□□□ -2.18
VPS35-207ENST00000568191 DOCK9Q9BZ29 2069 aa1.43□□□□□ -2.18
VPS35-207ENST00000568191 DCTN6O00399 190 aa1.43□□□□□ -2.18
VPS35-207ENST00000568191 MSH4O15457 936 aa1.43□□□□□ -2.18
VPS35-207ENST00000568191 ZSCAN12O43309 604 aa1.43□□□□□ -2.18
VPS35-207ENST00000568191 PRPSAP2O60256 369 aa1.43□□□□□ -2.18
VPS35-207ENST00000568191 RNASE2P10153 161 aaKnown RBP1.43□□□□□ -2.18
VPS35-207ENST00000568191 TDGF1P13385 188 aa1.43□□□□□ -2.18
VPS35-207ENST00000568191 MUC1P15941 1255 aaPredicted RBP1.43□□□□□ -2.18
VPS35-207ENST00000568191 STMN1P16949 149 aa1.43□□□□□ -2.18
VPS35-207ENST00000568191 PGCP20142 388 aa1.43□□□□□ -2.18
VPS35-207ENST00000568191 FGF9P31371 208 aaPredicted RBP1.43□□□□□ -2.18
VPS35-207ENST00000568191 FMO3P31513 532 aa1.43□□□□□ -2.18
VPS35-207ENST00000568191 PTGDSP41222 190 aa1.43□□□□□ -2.18
VPS35-207ENST00000568191 KIR2DS4P43632 304 aa1.43□□□□□ -2.18
VPS35-207ENST00000568191 VDAC2P45880 294 aaPredicted RBP1.43□□□□□ -2.18
VPS35-207ENST00000568191 TDGF1P3P51864 188 aa1.43□□□□□ -2.18
VPS35-207ENST00000568191 DLX1P56177 255 aa1.43□□□□□ -2.18
VPS35-207ENST00000568191 GRB7Q14451 532 aa1.43□□□□□ -2.18
VPS35-207ENST00000568191 RFX4Q33E94 735 aa1.43□□□□□ -2.18
VPS35-207ENST00000568191 LRRC10Q5BKY1 277 aa1.43□□□□□ -2.18
VPS35-207ENST00000568191 TIGD3Q6B0B8 471 aa1.43□□□□□ -2.18
VPS35-207ENST00000568191 ZSCAN25Q6NSZ9 544 aa1.43□□□□□ -2.18
VPS35-207ENST00000568191 TPRA1Q86W33 373 aa1.43□□□□□ -2.18
VPS35-207ENST00000568191 RDH10Q8IZV5 341 aa1.43□□□□□ -2.18
VPS35-207ENST00000568191 OR2L13Q8N349 312 aa1.43□□□□□ -2.18
VPS35-207ENST00000568191 Q8N976 141 aa1.43□□□□□ -2.18
VPS35-207ENST00000568191 OR10G3Q8NGC4 313 aa1.43□□□□□ -2.18
VPS35-207ENST00000568191 OR4D9Q8NGE8 314 aa1.43□□□□□ -2.18
VPS35-207ENST00000568191 RAET1EQ8TD07 263 aa1.43□□□□□ -2.18
VPS35-207ENST00000568191 DTX3LQ8TDB6 740 aa1.43□□□□□ -2.18
VPS35-207ENST00000568191 FAM3CQ92520 227 aa1.43□□□□□ -2.18
VPS35-207ENST00000568191 KCNK16Q96T55 309 aa1.43□□□□□ -2.18
VPS35-207ENST00000568191 P2RY13Q9BPV8 354 aa1.43□□□□□ -2.18
VPS35-207ENST00000568191 POLR1EQ9GZS1 481 aaKnown RBP1.43□□□□□ -2.18
VPS35-207ENST00000568191 SLC17A5Q9NRA2 495 aa1.43□□□□□ -2.18
VPS35-207ENST00000568191 CCL28Q9NRJ3 127 aa1.43□□□□□ -2.18
VPS35-207ENST00000568191 MARCOQ9UEW3 520 aaPredicted RBP1.43□□□□□ -2.18
VPS35-207ENST00000568191 CABIN1Q9Y6J0 2220 aa1.43□□□□□ -2.18
VPS35-207ENST00000568191 IGHV1OR21-1A0A087WYE8 117 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 IGKV3D-11A0A0A0MRZ8 115 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 C7orf66A4D0T2 115 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 RBMY1BA6NDE4 496 aaKnown RBP1.42□□□□□ -2.18
VPS35-207ENST00000568191 RBMY1EA6NEQ0 496 aaKnown RBP1.42□□□□□ -2.18
VPS35-207ENST00000568191 COLCA2A8K830 154 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 AGPAT2O15120 278 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 RS1O15537 224 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 CBR3O75828 277 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 VAMP5O95183 116 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 DIRAS3O95661 229 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 BAG2O95816 211 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 RBMY1DP0C7P1 496 aaKnown RBP1.42□□□□□ -2.18
VPS35-207ENST00000568191 RBMY1A1P0DJD3 496 aaKnown RBP1.42□□□□□ -2.18
VPS35-207ENST00000568191 NCF1P14598 390 aaPredicted RBP1.42□□□□□ -2.18
VPS35-207ENST00000568191 NT5EP21589 574 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 PSMA2P25787 234 aa1.42□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms