RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 YES1P07947 543 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 TACSTD2P09758 323 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 ASAH2BP0C7U1 165 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 FBLP22087 321 aaKnown RBP5.71□□□□□ -1.5
CLN3-223ENST00000566472 EDNRAP25101 427 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 MAPK3P27361 379 aaPredicted RBP5.71□□□□□ -1.5
CLN3-223ENST00000566472 SDHAP31040 664 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 UQCRC1P31930 480 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 ARL4DP49703 201 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 GFERP55789 205 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 SCAND1P57086 179 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 GPLD1P80108 840 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 HSD11B2P80365 405 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 RPL6Q02878 288 aaKnown RBP5.71□□□□□ -1.5
CLN3-223ENST00000566472 CSTF1Q05048 431 aaKnown RBP5.71□□□□□ -1.5
CLN3-223ENST00000566472 ERV3-1Q14264 604 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 INSL4Q14641 139 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 P2RY14Q15391 338 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 CD226Q15762 336 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 CARTPTQ16568 116 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 TP53I3Q53FA7 332 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 YIF1BQ5BJH7 314 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 ALG10Q5BKT4 473 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 LINC01590Q5TEZ4 76 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 FCRLBQ6BAA4 426 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 C5orf46Q6UWT4 87 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 SSX6Q7RTT6 188 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 SLC16A9Q7RTY1 509 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 FAM220AQ7Z4H9 259 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 NANOGNBQ7Z5D8 188 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 NR2C2APQ86WQ0 139 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 PLXDC1Q8IUK5 500 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 D2HGDHQ8N465 521 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 EID2Q8N6I1 236 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 FRMD1Q8N878 549 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 EXD3Q8N9H8 876 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 OR2T4Q8NH00 348 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 OR6S1Q8NH40 331 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 ZNF721Q8TF20 911 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 ADAMTS14Q8WXS8 1223 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 THAP4Q8WY91 577 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 GHSRQ92847 366 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 DAZLQ92904 295 aaKnown RBP5.71□□□□□ -1.5
CLN3-223ENST00000566472 ADIPOR1Q96A54 375 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 ZMYND19Q96E35 227 aaPredicted RBP5.71□□□□□ -1.5
CLN3-223ENST00000566472 SLC41A2Q96JW4 573 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 HSPA12BQ96MM6 686 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 TGM7Q96PF1 710 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 TPSD1Q9BZJ3 242 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 ADAM19Q9H013 955 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 SPRTNQ9H040 489 aaPredicted RBP5.71□□□□□ -1.5
CLN3-223ENST00000566472 NXF5Q9H1B4 397 aaKnown RBP5.71□□□□□ -1.5
CLN3-223ENST00000566472 NIPAL2Q9H841 368 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 MMP25Q9NPA2 562 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 RXFP3Q9NSD7 469 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 DDX28Q9NUL7 540 aaKnown RBP5.71□□□□□ -1.5
CLN3-223ENST00000566472 COPZ2Q9P299 210 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 FBXL4Q9UKA2 621 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 POU2F3Q9UKI9 436 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 SPATA2Q9UM82 520 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 CAMK2AQ9UQM7 478 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 RASD1Q9Y272 281 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 TMEM184BQ9Y519 407 aaPredicted RBP5.71□□□□□ -1.5
CLN3-223ENST00000566472 N6AMT1Q9Y5N5 214 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 SLCO1B1Q9Y6L6 691 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 PCNTO95613 3336 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 TMEM131Q92545 1883 aa5.71□□□□□ -1.5
CLN3-223ENST00000566472 CCDC88CQ9P219 2028 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 TRAV36DV7A0A075B6V5 113 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 IGHV1OR21-1A0A087WYE8 117 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 A0A0G2JMP0 313 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 TRBV2A0A0J9YWF9 115 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 TEX13CA0A0J9YWL9 993 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 A0A0X1KG70 313 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 LINC00854A0A1B0GVQ3 168 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 A0A1W2PRG6 482 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 OR6C68A6NDL8 312 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 ALG1L2C9J202 215 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 LRRN3E7EW58 273 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 INMT-MINDY4F8WBC2 141 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 TFECO14948 347 aaPredicted RBP5.7□□□□□ -1.5
CLN3-223ENST00000566472 TOX3O15405 576 aaPredicted RBP5.7□□□□□ -1.5
CLN3-223ENST00000566472 ARHGEF9O43307 516 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 TSPAN2O60636 221 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 SNRNP200O75643 2136 aaKnown RBP5.7□□□□□ -1.5
CLN3-223ENST00000566472 RENP00797 406 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 MT-ATP6P00846 226 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 HIST1H2ABP04908 130 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 GYPBP06028 91 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 EIF4EP06730 217 aaKnown RBP5.7□□□□□ -1.5
CLN3-223ENST00000566472 EPXP11678 715 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 PGCP20142 388 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 ALAS2P22557 587 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 S100A1P23297 94 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 AHCYP23526 432 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 IL12BP29460 328 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 ERP29P30040 261 aaKnown RBP5.7□□□□□ -1.5
CLN3-223ENST00000566472 SLC6A1P30531 599 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 ACVR1BP36896 505 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 AQP2P41181 271 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms