RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 ELOA3DA6NLF2 546 aaPredicted RBP18.25■□□□□ 0.51
CLN3-219ENST00000565778 GPX2P18283 190 aa18.25■□□□□ 0.51
CLN3-219ENST00000565778 SLC6A2P23975 617 aa18.25■□□□□ 0.51
CLN3-219ENST00000565778 PRKAR1BP31321 381 aa18.25■□□□□ 0.51
CLN3-219ENST00000565778 ATP5J2P56134 94 aa18.25■□□□□ 0.51
CLN3-219ENST00000565778 GABRA6Q16445 453 aa18.25■□□□□ 0.51
CLN3-219ENST00000565778 ELOA3BQ3SY89 546 aa18.25■□□□□ 0.51
CLN3-219ENST00000565778 TSPO2Q5TGU0 170 aa18.25■□□□□ 0.51
CLN3-219ENST00000565778 KBTBD8Q8NFY9 601 aa18.25■□□□□ 0.51
CLN3-219ENST00000565778 ELOA3Q8NG57 546 aa18.25■□□□□ 0.51
CLN3-219ENST00000565778 STK35Q8TDR2 534 aa18.25■□□□□ 0.51
CLN3-219ENST00000565778 SLC25A36Q96CQ1 311 aa18.25■□□□□ 0.51
CLN3-219ENST00000565778 ZNF607Q96SK3 696 aa18.25■□□□□ 0.51
CLN3-219ENST00000565778 NPHS2Q9NP85 383 aa18.25■□□□□ 0.51
CLN3-219ENST00000565778 ZNF701Q9NV72 531 aaPredicted RBP18.25■□□□□ 0.51
CLN3-219ENST00000565778 CISD1Q9NZ45 108 aaKnown RBP18.25■□□□□ 0.51
CLN3-219ENST00000565778 LEF1Q9UJU2 399 aaPredicted RBP18.25■□□□□ 0.51
CLN3-219ENST00000565778 GMEB1Q9Y692 573 aa18.25■□□□□ 0.51
CLN3-219ENST00000565778 ACANP16112 2415 aa18.25■□□□□ 0.51
CLN3-219ENST00000565778 MTORP42345 2549 aa18.25■□□□□ 0.51
CLN3-219ENST00000565778 VPS13CQ709C8 3753 aa18.24■□□□□ 0.51
CLN3-219ENST00000565778 TRBV5-3A0A0A0MS03 114 aa18.24■□□□□ 0.51
CLN3-219ENST00000565778 H7C1Q1 480 aa18.24■□□□□ 0.51
CLN3-219ENST00000565778 ABCD4O14678 606 aa18.24■□□□□ 0.51
CLN3-219ENST00000565778 KRT33AO76009 404 aa18.24■□□□□ 0.51
CLN3-219ENST00000565778 AHSA1O95433 338 aa18.24■□□□□ 0.51
CLN3-219ENST00000565778 ITGA5P08648 1049 aa18.24■□□□□ 0.51
CLN3-219ENST00000565778 PAX1P15863 534 aa18.24■□□□□ 0.51
CLN3-219ENST00000565778 ZNF83P51522 516 aa18.24■□□□□ 0.51
CLN3-219ENST00000565778 TGFBR3Q03167 851 aa18.24■□□□□ 0.51
CLN3-219ENST00000565778 SCARB2Q14108 478 aa18.24■□□□□ 0.51
CLN3-219ENST00000565778 RUNDC3AQ59EK9 446 aa18.24■□□□□ 0.51
CLN3-219ENST00000565778 KLHL17Q6TDP4 642 aa18.24■□□□□ 0.51
CLN3-219ENST00000565778 TMEM108Q6UXF1 575 aa18.24■□□□□ 0.51
CLN3-219ENST00000565778 CLEC9AQ6UXN8 241 aa18.24■□□□□ 0.51
CLN3-219ENST00000565778 DLEU7Q6UYE1 221 aa18.24■□□□□ 0.51
CLN3-219ENST00000565778 Q71RC1 249 aaPredicted RBP18.24■□□□□ 0.51
CLN3-219ENST00000565778 PIAS4Q8N2W9 510 aaPredicted RBP18.24■□□□□ 0.51
CLN3-219ENST00000565778 CIARTQ8N365 385 aaPredicted RBP18.24■□□□□ 0.51
CLN3-219ENST00000565778 ZIC4Q8N9L1 334 aa18.24■□□□□ 0.51
CLN3-219ENST00000565778 GTPBP3Q969Y2 492 aaKnown RBP18.24■□□□□ 0.51
CLN3-219ENST00000565778 TMEM45BQ96B21 275 aa18.24■□□□□ 0.51
CLN3-219ENST00000565778 TRMT61AQ96FX7 289 aaKnown RBP18.24■□□□□ 0.51
CLN3-219ENST00000565778 ZNF385AQ96PM9 386 aaKnown RBP18.24■□□□□ 0.51
CLN3-219ENST00000565778 C1QTNF6Q9BXI9 259 aa18.24■□□□□ 0.51
CLN3-219ENST00000565778 TRIM2Q9C040 744 aa18.24■□□□□ 0.51
CLN3-219ENST00000565778 IKZF5Q9H5V7 419 aa18.24■□□□□ 0.51
CLN3-219ENST00000565778 TMEM38AQ9H6F2 299 aa18.24■□□□□ 0.51
CLN3-219ENST00000565778 NPAP1Q9NZP6 1156 aa18.24■□□□□ 0.51
CLN3-219ENST00000565778 NDUFAF1Q9Y375 327 aa18.24■□□□□ 0.51
CLN3-219ENST00000565778 SLC25A15Q9Y619 301 aa18.24■□□□□ 0.51
CLN3-219ENST00000565778 ROS1P08922 2347 aa18.24■□□□□ 0.51
CLN3-219ENST00000565778 C2CD3Q4AC94 2353 aa18.24■□□□□ 0.51
CLN3-219ENST00000565778 RAI1Q7Z5J4 1906 aaPredicted RBP18.23■□□□□ 0.51
CLN3-219ENST00000565778 TMEM229AB2RXF0 380 aa18.23■□□□□ 0.51
CLN3-219ENST00000565778 SMAD7O15105 426 aaKnown RBP18.23■□□□□ 0.51
CLN3-219ENST00000565778 TPST1O60507 370 aa18.23■□□□□ 0.51
CLN3-219ENST00000565778 EDF1O60869 148 aaKnown RBP18.23■□□□□ 0.51
CLN3-219ENST00000565778 NPIPB7O75200 414 aa18.23■□□□□ 0.51
CLN3-219ENST00000565778 SERPINB7O75635 380 aa18.23■□□□□ 0.51
CLN3-219ENST00000565778 VAMP5O95183 116 aa18.23■□□□□ 0.51
CLN3-219ENST00000565778 SOD3P08294 240 aa18.23■□□□□ 0.51
CLN3-219ENST00000565778 DANCRP0C864 163 aa18.23■□□□□ 0.51
CLN3-219ENST00000565778 RPS5P46782 204 aaKnown RBP18.23■□□□□ 0.51
CLN3-219ENST00000565778 DHRS4L2Q6PKH6 230 aa18.23■□□□□ 0.51
CLN3-219ENST00000565778 MFSD8Q8NHS3 518 aa18.23■□□□□ 0.51
CLN3-219ENST00000565778 RNF217Q8TC41 542 aa18.23■□□□□ 0.51
CLN3-219ENST00000565778 STON2Q8WXE9 905 aa18.23■□□□□ 0.51
CLN3-219ENST00000565778 PRR14Q9BWN1 585 aa18.23■□□□□ 0.51
CLN3-219ENST00000565778 RSPO3Q9BXY4 272 aaPredicted RBP18.23■□□□□ 0.51
CLN3-219ENST00000565778 PIF1Q9H611 641 aa18.23■□□□□ 0.51
CLN3-219ENST00000565778 SLC13A4Q9UKG4 626 aa18.23■□□□□ 0.51
CLN3-219ENST00000565778 A0A0G2JND7 137 aa18.22■□□□□ 0.51
CLN3-219ENST00000565778 PRORSD1PA6NEY8 169 aa18.22■□□□□ 0.51
CLN3-219ENST00000565778 TRIM64A6NGJ6 449 aa18.22■□□□□ 0.51
CLN3-219ENST00000565778 TRIM64BA6NI03 449 aa18.22■□□□□ 0.51
CLN3-219ENST00000565778 FAM171A2A8MVW0 826 aa18.22■□□□□ 0.51
CLN3-219ENST00000565778 M0R1B8 84 aa18.22■□□□□ 0.51
CLN3-219ENST00000565778 PDLIM1O00151 329 aa18.22■□□□□ 0.51
CLN3-219ENST00000565778 ANGPT2O15123 496 aa18.22■□□□□ 0.51
CLN3-219ENST00000565778 CDH2P19022 906 aaPredicted RBP18.22■□□□□ 0.51
CLN3-219ENST00000565778 GTF2E2P29084 291 aaKnown RBP18.22■□□□□ 0.51
CLN3-219ENST00000565778 MPGP29372 298 aa18.22■□□□□ 0.51
CLN3-219ENST00000565778 AQP1P29972 269 aa18.22■□□□□ 0.51
CLN3-219ENST00000565778 GLIPR1L2Q4G1C9 344 aa18.22■□□□□ 0.51
CLN3-219ENST00000565778 CREB3L2Q70SY1 520 aa18.22■□□□□ 0.51
CLN3-219ENST00000565778 LSMEM1Q8N8F7 131 aa18.22■□□□□ 0.51
CLN3-219ENST00000565778 POMGNT2Q8NAT1 580 aa18.22■□□□□ 0.51
CLN3-219ENST00000565778 HIPK4Q8NE63 616 aa18.22■□□□□ 0.51
CLN3-219ENST00000565778 KTI12Q96EK9 354 aaPredicted RBP18.22■□□□□ 0.51
CLN3-219ENST00000565778 RADILQ96JH8 1075 aa18.22■□□□□ 0.51
CLN3-219ENST00000565778 CPPED1Q9BRF8 314 aaPredicted RBP18.22■□□□□ 0.51
CLN3-219ENST00000565778 SLCO5A1Q9H2Y9 848 aa18.22■□□□□ 0.51
CLN3-219ENST00000565778 MGAT4BQ9UQ53 548 aa18.22■□□□□ 0.51
CLN3-219ENST00000565778 RASD1Q9Y272 281 aa18.22■□□□□ 0.51
CLN3-219ENST00000565778 ARID1AO14497 2285 aa18.22■□□□□ 0.51
CLN3-219ENST00000565778 A0A1B0GWA3 101 aa18.21■□□□□ 0.51
CLN3-219ENST00000565778 SHISA9B4DS77 424 aa18.21■□□□□ 0.51
CLN3-219ENST00000565778 OVOL3O00110 214 aa18.21■□□□□ 0.51
CLN3-219ENST00000565778 SASH3O75995 380 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms