RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 DIO2Q92813 273 aa13.69□□□□□ -0.22
CUX1-215ENST00000556210 BCL2L10Q9HD36 194 aa13.69□□□□□ -0.22
CUX1-215ENST00000556210 COL4A6Q14031 1691 aa13.69□□□□□ -0.22
CUX1-215ENST00000556210 TMEM229AB2RXF0 380 aa13.69□□□□□ -0.22
CUX1-215ENST00000556210 SYT5O00445 386 aa13.69□□□□□ -0.22
CUX1-215ENST00000556210 PLRG1O43660 514 aaKnown RBP13.69□□□□□ -0.22
CUX1-215ENST00000556210 ITGA10O75578 1167 aa13.69□□□□□ -0.22
CUX1-215ENST00000556210 HOXB9P17482 250 aaPredicted RBP13.69□□□□□ -0.22
CUX1-215ENST00000556210 C4orf46Q504U0 113 aa13.69□□□□□ -0.22
CUX1-215ENST00000556210 GALNTL5Q7Z4T8 443 aa13.69□□□□□ -0.22
CUX1-215ENST00000556210 GALNT11Q8NCW6 608 aa13.69□□□□□ -0.22
CUX1-215ENST00000556210 DCLRE1CQ96SD1 692 aaKnown RBP13.69□□□□□ -0.22
CUX1-215ENST00000556210 G6PC3Q9BUM1 346 aa13.69□□□□□ -0.22
CUX1-215ENST00000556210 ACOXLQ9NUZ1 547 aa13.69□□□□□ -0.22
CUX1-215ENST00000556210 WBP1LQ9NX94 342 aa13.69□□□□□ -0.22
CUX1-215ENST00000556210 FBXO9Q9UK97 447 aaPredicted RBP13.69□□□□□ -0.22
CUX1-215ENST00000556210 CBLCQ9ULV8 474 aa13.69□□□□□ -0.22
CUX1-215ENST00000556210 SLC22A7Q9Y694 548 aa13.69□□□□□ -0.22
CUX1-215ENST00000556210 A0A0C4DFX4 3053 aa13.69□□□□□ -0.22
CUX1-215ENST00000556210 FZD7O75084 574 aa13.69□□□□□ -0.22
CUX1-215ENST00000556210 KDM4BO94953 1096 aa13.69□□□□□ -0.22
CUX1-215ENST00000556210 EFEMP2O95967 443 aa13.69□□□□□ -0.22
CUX1-215ENST00000556210 CFIP05156 583 aa13.69□□□□□ -0.22
CUX1-215ENST00000556210 HYAL1Q12794 435 aa13.69□□□□□ -0.22
CUX1-215ENST00000556210 ZMYND11Q15326 602 aa13.69□□□□□ -0.22
CUX1-215ENST00000556210 ELOCQ15369 112 aa13.69□□□□□ -0.22
CUX1-215ENST00000556210 SLC25A35Q3KQZ1 300 aa13.69□□□□□ -0.22
CUX1-215ENST00000556210 VWA2Q5GFL6 755 aa13.69□□□□□ -0.22
CUX1-215ENST00000556210 SFXN4Q6P4A7 337 aa13.69□□□□□ -0.22
CUX1-215ENST00000556210 SLITRK4Q8IW52 837 aa13.69□□□□□ -0.22
CUX1-215ENST00000556210 CREB3L1Q96BA8 519 aa13.69□□□□□ -0.22
CUX1-215ENST00000556210 MRTO4Q9UKD2 239 aaKnown RBP13.69□□□□□ -0.22
CUX1-215ENST00000556210 RABL2BQ9UNT1 228 aa13.69□□□□□ -0.22
CUX1-215ENST00000556210 DPM1O60762 260 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 SBK2P0C263 348 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 PITPNAQ00169 270 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 OR2A5Q96R48 311 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 GPER1Q99527 375 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 MIXL1Q9H2W2 232 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 MAN2C1Q9NTJ4 1040 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 SLC23A1Q9UHI7 598 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 C19orf53Q9UNZ5 99 aaPredicted RBP13.68□□□□□ -0.22
CUX1-215ENST00000556210 NLRC5Q86WI3 1866 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 FXYD6-FXYD2A0A087WZ82 144 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 CPEP16870 476 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 DRD1P21728 446 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 GPR143P51810 404 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 FUT5Q11128 374 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 ULK3Q6PHR2 472 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 ZNF782Q6ZMW2 699 aaPredicted RBP13.68□□□□□ -0.22
CUX1-215ENST00000556210 SLC29A4Q7RTT9 530 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 COQ8AQ8NI60 647 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 ACOT12Q8WYK0 555 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 SENP5Q96HI0 755 aaPredicted RBP13.68□□□□□ -0.22
CUX1-215ENST00000556210 FXYD6Q9H0Q3 95 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 SYT4Q9H2B2 425 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 KLRF1Q9NZS2 232 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 FBXL3Q9UKT7 428 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 NOTCH4Q99466 2003 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 BPTFQ12830 3046 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 B8ZZF3 427 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 ERVH48-1M5A8F1 160 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 PLA2G10O15496 165 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 TACSTD2P09758 323 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 GPR176Q14439 515 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 SPERTQ8NA61 448 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 MORN4Q8NDC4 146 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 KIAA1143Q96AT1 154 aaPredicted RBP13.68□□□□□ -0.22
CUX1-215ENST00000556210 S100A16Q96FQ6 103 aaKnown RBP13.68□□□□□ -0.22
CUX1-215ENST00000556210 WDFY2Q96P53 400 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 ARHGAP9Q9BRR9 750 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 OR10A5Q9H207 317 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 NT5DC2Q9H857 520 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 PRAMEF2O60811 474 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 GIMD1P0DJR0 217 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 GP1BBP13224 206 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 GABRB1P18505 474 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 PSMD4P55036 377 aaKnown RBP13.68□□□□□ -0.22
CUX1-215ENST00000556210 C21orf58P58505 322 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 SNRPNP63162 240 aaKnown RBP13.68□□□□□ -0.22
CUX1-215ENST00000556210 PHF19Q5T6S3 580 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 GARNL3Q5VVW2 1013 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 ZNF770Q6IQ21 691 aaPredicted RBP13.68□□□□□ -0.22
CUX1-215ENST00000556210 METAP1DQ6UB28 335 aaPredicted RBP13.68□□□□□ -0.22
CUX1-215ENST00000556210 KANSL1Q7Z3B3 1105 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 LSM14AQ8ND56 463 aaKnown RBP13.68□□□□□ -0.22
CUX1-215ENST00000556210 C17orf47Q8NEP4 570 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 NUDT22Q9BRQ3 303 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 TMEM43Q9BTV4 400 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 NOX4Q9NPH5 578 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 C14orf105Q9NVL8 296 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 FKBP14Q9NWM8 211 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 RCE1Q9Y256 329 aa13.68□□□□□ -0.22
CUX1-215ENST00000556210 CHD7Q9P2D1 2997 aa13.67□□□□□ -0.22
CUX1-215ENST00000556210 IMPA2O14732 288 aa13.67□□□□□ -0.22
CUX1-215ENST00000556210 KCNJ13O60928 360 aa13.67□□□□□ -0.22
CUX1-215ENST00000556210 SLC22A5O76082 557 aa13.67□□□□□ -0.22
CUX1-215ENST00000556210 EVX1P49640 407 aa13.67□□□□□ -0.22
CUX1-215ENST00000556210 CDK5Q00535 292 aa13.67□□□□□ -0.22
CUX1-215ENST00000556210 RAB30Q15771 203 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms