RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 TRAPPC13A5PLN9 417 aa12.56□□□□□ -0.4
PTCH1-226ENST00000553011 ZNF716A6NP11 495 aa12.56□□□□□ -0.4
PTCH1-226ENST00000553011 UBOX5O94941 541 aa12.56□□□□□ -0.4
PTCH1-226ENST00000553011 AKR7A3O95154 331 aa12.56□□□□□ -0.4
PTCH1-226ENST00000553011 GPIP06744 558 aa12.56□□□□□ -0.4
PTCH1-226ENST00000553011 YES1P07947 543 aa12.56□□□□□ -0.4
PTCH1-226ENST00000553011 CD8BP10966 210 aa12.56□□□□□ -0.4
PTCH1-226ENST00000553011 COX6B1P14854 86 aa12.56□□□□□ -0.4
PTCH1-226ENST00000553011 H3F3AP84243 136 aa12.56□□□□□ -0.4
PTCH1-226ENST00000553011 FXNQ16595 210 aa12.56□□□□□ -0.4
PTCH1-226ENST00000553011 TMEM201Q5SNT2 666 aa12.56□□□□□ -0.4
PTCH1-226ENST00000553011 SWT1Q5T5J6 900 aaKnown RBP12.56□□□□□ -0.4
PTCH1-226ENST00000553011 ZNF610Q8N9Z0 462 aa12.56□□□□□ -0.4
PTCH1-226ENST00000553011 PIGXQ8TBF5 258 aa12.56□□□□□ -0.4
PTCH1-226ENST00000553011 LZICQ8WZA0 190 aa12.56□□□□□ -0.4
PTCH1-226ENST00000553011 TAAR8Q969N4 342 aa12.56□□□□□ -0.4
PTCH1-226ENST00000553011 SLC25A36Q96CQ1 311 aa12.56□□□□□ -0.4
PTCH1-226ENST00000553011 HSH2DQ96JZ2 352 aa12.56□□□□□ -0.4
PTCH1-226ENST00000553011 NAA11Q9BSU3 229 aaPredicted RBP12.56□□□□□ -0.4
PTCH1-226ENST00000553011 TAPBPLQ9BX59 468 aa12.56□□□□□ -0.4
PTCH1-226ENST00000553011 BCO1Q9HAY6 547 aa12.56□□□□□ -0.4
PTCH1-226ENST00000553011 GALNT8Q9NY28 637 aa12.56□□□□□ -0.4
PTCH1-226ENST00000553011 SLC7A7Q9UM01 511 aa12.56□□□□□ -0.4
PTCH1-226ENST00000553011 DCHS2Q6V1P9 2916 aa12.56□□□□□ -0.4
PTCH1-226ENST00000553011 SPG11Q96JI7 2443 aa12.56□□□□□ -0.4
PTCH1-226ENST00000553011 FTCDNL1E5RQL4 147 aa12.55□□□□□ -0.4
PTCH1-226ENST00000553011 CHP2O43745 196 aa12.55□□□□□ -0.4
PTCH1-226ENST00000553011 EIF1BO60739 113 aaKnown RBP12.55□□□□□ -0.4
PTCH1-226ENST00000553011 PIN1Q13526 163 aaPredicted RBP12.55□□□□□ -0.4
PTCH1-226ENST00000553011 OTUD3Q5T2D3 398 aaPredicted RBP12.55□□□□□ -0.4
PTCH1-226ENST00000553011 PAQR6Q6TCH4 344 aa12.55□□□□□ -0.4
PTCH1-226ENST00000553011 LINC00114Q6XXX2 140 aa12.55□□□□□ -0.4
PTCH1-226ENST00000553011 GDF7Q7Z4P5 450 aa12.55□□□□□ -0.4
PTCH1-226ENST00000553011 DMRTC2Q8IXT2 367 aaPredicted RBP12.55□□□□□ -0.4
PTCH1-226ENST00000553011 MFSD8Q8NHS3 518 aa12.55□□□□□ -0.4
PTCH1-226ENST00000553011 LRRC46Q96FV0 321 aa12.55□□□□□ -0.4
PTCH1-226ENST00000553011 SLC41A3Q96GZ6 507 aa12.55□□□□□ -0.4
PTCH1-226ENST00000553011 SPOCK3Q9BQ16 436 aa12.55□□□□□ -0.4
PTCH1-226ENST00000553011 GP6Q9HCN6 339 aa12.55□□□□□ -0.4
PTCH1-226ENST00000553011 PLSCR4Q9NRQ2 329 aa12.55□□□□□ -0.4
PTCH1-226ENST00000553011 FOXD3Q9UJU5 478 aaPredicted RBP12.55□□□□□ -0.4
PTCH1-226ENST00000553011 SNX13Q9Y5W8 968 aa12.55□□□□□ -0.4
PTCH1-226ENST00000553011 POLQO75417 2590 aa12.54□□□□□ -0.4
PTCH1-226ENST00000553011 TRAV36DV7A0A075B6V5 113 aa12.54□□□□□ -0.4
PTCH1-226ENST00000553011 IGKV3D-15A0A087WSY6 115 aa12.54□□□□□ -0.4
PTCH1-226ENST00000553011 AQP7P3A6NL99 342 aa12.54□□□□□ -0.4
PTCH1-226ENST00000553011 ZNF724A8MTY0 619 aa12.54□□□□□ -0.4
PTCH1-226ENST00000553011 CBLP22681 906 aa12.54□□□□□ -0.4
PTCH1-226ENST00000553011 EDNRAP25101 427 aa12.54□□□□□ -0.4
PTCH1-226ENST00000553011 YAP1P46937 504 aaKnown RBP12.54□□□□□ -0.4
PTCH1-226ENST00000553011 P2RY4P51582 365 aa12.54□□□□□ -0.4
PTCH1-226ENST00000553011 SLC16A1P53985 500 aa12.54□□□□□ -0.4
PTCH1-226ENST00000553011 TAS2R41P59536 307 aa12.54□□□□□ -0.4
PTCH1-226ENST00000553011 FAM27E3Q08E93 113 aa12.54□□□□□ -0.4
PTCH1-226ENST00000553011 FOXD4Q12950 439 aaPredicted RBP12.54□□□□□ -0.4
PTCH1-226ENST00000553011 PDK3Q15120 406 aa12.54□□□□□ -0.4
PTCH1-226ENST00000553011 EXOC3L2Q2M3D2 409 aa12.54□□□□□ -0.4
PTCH1-226ENST00000553011 IFI44LQ53G44 452 aa12.54□□□□□ -0.4
PTCH1-226ENST00000553011 FAM69AQ5T7M9 428 aa12.54□□□□□ -0.4
PTCH1-226ENST00000553011 C5orf46Q6UWT4 87 aa12.54□□□□□ -0.4
PTCH1-226ENST00000553011 FKBP9P1Q75LS8 142 aa12.54□□□□□ -0.4
PTCH1-226ENST00000553011 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.54□□□□□ -0.4
PTCH1-226ENST00000553011 FAM86B1Q8N7N1 296 aa12.54□□□□□ -0.4
PTCH1-226ENST00000553011 GEMIN6Q8WXD5 167 aaKnown RBP12.54□□□□□ -0.4
PTCH1-226ENST00000553011 MARVELD3Q96A59 401 aa12.54□□□□□ -0.4
PTCH1-226ENST00000553011 PRSS27Q9BQR3 290 aa12.54□□□□□ -0.4
PTCH1-226ENST00000553011 TMEM43Q9BTV4 400 aa12.54□□□□□ -0.4
PTCH1-226ENST00000553011 AMBRA1Q9C0C7 1298 aa12.54□□□□□ -0.4
PTCH1-226ENST00000553011 DCAF13Q9NV06 445 aaKnown RBP12.54□□□□□ -0.4
PTCH1-226ENST00000553011 TAS2R1Q9NYW7 299 aa12.54□□□□□ -0.4
PTCH1-226ENST00000553011 SEC14L4Q9UDX3 406 aa12.54□□□□□ -0.4
PTCH1-226ENST00000553011 MAGEL2Q9UJ55 1249 aa12.54□□□□□ -0.4
PTCH1-226ENST00000553011 RIMS3Q9UJD0 308 aa12.54□□□□□ -0.4
PTCH1-226ENST00000553011 RPS6KA6Q9UK32 745 aa12.54□□□□□ -0.4
PTCH1-226ENST00000553011 ROS1P08922 2347 aa12.54□□□□□ -0.4
PTCH1-226ENST00000553011 APCP25054 2843 aa12.53□□□□□ -0.4
PTCH1-226ENST00000553011 LRRN3E7EW58 273 aa12.53□□□□□ -0.4
PTCH1-226ENST00000553011 ARPC2O15144 300 aa12.53□□□□□ -0.4
PTCH1-226ENST00000553011 HNRNPRO43390 633 aaKnown RBP12.53□□□□□ -0.4
PTCH1-226ENST00000553011 OR2T1O43869 369 aa12.53□□□□□ -0.4
PTCH1-226ENST00000553011 GMNNO75496 209 aa12.53□□□□□ -0.4
PTCH1-226ENST00000553011 PDE5AO76074 875 aa12.53□□□□□ -0.4
PTCH1-226ENST00000553011 OR5F1O95221 314 aa12.53□□□□□ -0.4
PTCH1-226ENST00000553011 BGLAPP02818 100 aa12.53□□□□□ -0.4
PTCH1-226ENST00000553011 IFNW1P05000 195 aa12.53□□□□□ -0.4
PTCH1-226ENST00000553011 FUT4P22083 530 aa12.53□□□□□ -0.4
PTCH1-226ENST00000553011 GRPRP30550 384 aa12.53□□□□□ -0.4
PTCH1-226ENST00000553011 NTF4P34130 210 aa12.53□□□□□ -0.4
PTCH1-226ENST00000553011 CD79BP40259 229 aa12.53□□□□□ -0.4
PTCH1-226ENST00000553011 LTBQ06643 244 aa12.53□□□□□ -0.4
PTCH1-226ENST00000553011 SLC17A1Q14916 467 aa12.53□□□□□ -0.4
PTCH1-226ENST00000553011 SPATS1Q496A3 300 aa12.53□□□□□ -0.4
PTCH1-226ENST00000553011 TFAP2EQ6VUC0 442 aa12.53□□□□□ -0.4
PTCH1-226ENST00000553011 GALNT5Q7Z7M9 940 aa12.53□□□□□ -0.4
PTCH1-226ENST00000553011 NKAIN4Q8IVV8 208 aa12.53□□□□□ -0.4
PTCH1-226ENST00000553011 MPP4Q96JB8 637 aa12.53□□□□□ -0.4
PTCH1-226ENST00000553011 MOGAT1Q96PD6 335 aa12.53□□□□□ -0.4
PTCH1-226ENST00000553011 EPYCQ99645 322 aa12.53□□□□□ -0.4
PTCH1-226ENST00000553011 TACO1Q9BSH4 297 aaKnown RBP12.53□□□□□ -0.4
PTCH1-226ENST00000553011 ZNF426Q9BUY5 554 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms