RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 NUBP2Q9Y5Y2 271 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 CKAP5Q14008 2032 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 TBC1D3DA0A087WVF3 549 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 TBC1D3IA0A087WXS9 549 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 TBC1D3EA0A087X179 549 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 TBC1D3KA0A087X1G2 549 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 ZNF840PA6NDX5 716 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 TBC1D3FA6NER0 549 aaPredicted RBP5.07□□□□□ -1.6
LIMA1-203ENST00000547825 HIDE1A8MVS5 230 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 TBC1D3LB9A6J9 549 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 DOK2O60496 412 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 SLC25A12O75746 678 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 PPP1R3DO95685 299 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 RAF1P04049 648 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 CD2P06729 351 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 TBC1D3HP0C7X1 549 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 NPR2P20594 1047 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 LORP23490 312 aaPredicted RBP5.07□□□□□ -1.6
LIMA1-203ENST00000547825 HLA-DMAP28067 261 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 S100A2P29034 98 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 HOXA9P31269 272 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 GRK6P43250 576 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 OR3A2P47893 321 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 CRYBA2P53672 197 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 SIM1P81133 766 aaPredicted RBP5.07□□□□□ -1.6
LIMA1-203ENST00000547825 DGCR2P98153 550 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 TNFRSF17Q02223 184 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 TAP2Q03519 686 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 ILF3Q12906 894 aaKnown RBP eCLIP5.07□□□□□ -1.6
LIMA1-203ENST00000547825 ASAH1Q13510 395 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 IRF3Q14653 427 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 GRM7Q14831 915 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 DEFB134Q4QY38 66 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 SLC22A10Q63ZE4 541 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 TBC1D3GQ6DHY5 549 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 TBC1D3CQ6IPX1 549 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 C22orf39Q6P5X5 142 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 UNQ6126/PRO20091Q6UXV3 157 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 LINC00299Q6ZSB3 139 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 ZNF546Q86UE3 836 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 PTOV1Q86YD1 416 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 ZNF101Q8IZC7 436 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 TBC1D3Q8IZP1 549 aaPredicted RBP5.07□□□□□ -1.6
LIMA1-203ENST00000547825 DCAF4L2Q8NA75 395 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 OR6T1Q8NGN1 323 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 OR2L2Q8NH16 312 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 RERGQ96A58 199 aaPredicted RBP5.07□□□□□ -1.6
LIMA1-203ENST00000547825 METTL2AQ96IZ6 378 aaKnown RBP5.07□□□□□ -1.6
LIMA1-203ENST00000547825 ZNF582Q96NG8 517 aaPredicted RBP5.07□□□□□ -1.6
LIMA1-203ENST00000547825 GAL3ST4Q96RP7 486 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 ACTR6Q9GZN1 396 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 NT5DC2Q9H857 520 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 MRPS30Q9NP92 439 aaKnown RBP5.07□□□□□ -1.6
LIMA1-203ENST00000547825 PRDM7Q9NQW5 492 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 UPB1Q9UBR1 384 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 PRSS50Q9UI38 385 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 MRTO4Q9UKD2 239 aaKnown RBP5.07□□□□□ -1.6
LIMA1-203ENST00000547825 MAFFQ9ULX9 164 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 PLA2G2DQ9UNK4 145 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 YIPF1Q9Y548 306 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 WNT6Q9Y6F9 365 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 TRAV27A0A087WT01 109 aa5.06□□□□□ -1.6
LIMA1-203ENST00000547825 C11orf98E9PRG8 122 aa5.06□□□□□ -1.6
LIMA1-203ENST00000547825 ATG12O94817 140 aa5.06□□□□□ -1.6
LIMA1-203ENST00000547825 SLC2A10O95528 541 aa5.06□□□□□ -1.6
LIMA1-203ENST00000547825 CXCL14O95715 111 aa5.06□□□□□ -1.6
LIMA1-203ENST00000547825 MMP11P24347 488 aa5.06□□□□□ -1.6
LIMA1-203ENST00000547825 HTR2AP28223 471 aa5.06□□□□□ -1.6
LIMA1-203ENST00000547825 SPINT3P49223 89 aa5.06□□□□□ -1.6
LIMA1-203ENST00000547825 MAP2K6P52564 334 aa5.06□□□□□ -1.6
LIMA1-203ENST00000547825 ZNF616Q08AN1 781 aa5.06□□□□□ -1.6
LIMA1-203ENST00000547825 TMEM44Q2T9K0 475 aa5.06□□□□□ -1.6
LIMA1-203ENST00000547825 ZNF750Q32MQ0 723 aa5.06□□□□□ -1.6
LIMA1-203ENST00000547825 CDNFQ49AH0 187 aa5.06□□□□□ -1.6
LIMA1-203ENST00000547825 GLT8D1Q68CQ7 371 aa5.06□□□□□ -1.6
LIMA1-203ENST00000547825 CD163Q86VB7 1156 aa5.06□□□□□ -1.6
LIMA1-203ENST00000547825 ADGRF3Q8IZF5 1079 aa5.06□□□□□ -1.6
LIMA1-203ENST00000547825 SDR9C7Q8NEX9 313 aa5.06□□□□□ -1.6
LIMA1-203ENST00000547825 NUP43Q8NFH3 380 aa5.06□□□□□ -1.6
LIMA1-203ENST00000547825 OR6M1Q8NGM8 313 aa5.06□□□□□ -1.6
LIMA1-203ENST00000547825 OR13C5Q8NGS8 318 aa5.06□□□□□ -1.6
LIMA1-203ENST00000547825 CCDC107Q8WV48 283 aa5.06□□□□□ -1.6
LIMA1-203ENST00000547825 GHSRQ92847 366 aa5.06□□□□□ -1.6
LIMA1-203ENST00000547825 DVL3Q92997 716 aaPredicted RBP5.06□□□□□ -1.6
LIMA1-203ENST00000547825 FATE1Q969F0 183 aa5.06□□□□□ -1.6
LIMA1-203ENST00000547825 C16orf58Q96GQ5 468 aa5.06□□□□□ -1.6
LIMA1-203ENST00000547825 ZNF558Q96NG5 402 aa5.06□□□□□ -1.6
LIMA1-203ENST00000547825 CMKLR1Q99788 373 aa5.06□□□□□ -1.6
LIMA1-203ENST00000547825 SYT3Q9BQG1 590 aa5.06□□□□□ -1.6
LIMA1-203ENST00000547825 ZNF559Q9BR84 538 aa5.06□□□□□ -1.6
LIMA1-203ENST00000547825 SEMA4CQ9C0C4 833 aa5.06□□□□□ -1.6
LIMA1-203ENST00000547825 CST11Q9H112 138 aa5.06□□□□□ -1.6
LIMA1-203ENST00000547825 CXorf36Q9H7Y0 433 aa5.06□□□□□ -1.6
LIMA1-203ENST00000547825 CALML5Q9NZT1 146 aa5.06□□□□□ -1.6
LIMA1-203ENST00000547825 EMC3Q9P0I2 261 aa5.06□□□□□ -1.6
LIMA1-203ENST00000547825 KLHL9Q9P2J3 617 aa5.06□□□□□ -1.6
LIMA1-203ENST00000547825 SCP2D1Q9UJQ7 156 aa5.06□□□□□ -1.6
LIMA1-203ENST00000547825 SLC7A7Q9UM01 511 aa5.06□□□□□ -1.6
LIMA1-203ENST00000547825 CHST2Q9Y4C5 530 aa5.06□□□□□ -1.6
LIMA1-203ENST00000547825 A3GALT2U3KPV4 340 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms