RNA–Protein interactions for RNA: ENST00000523261.1

NKX3-1-202, Transcript of NK3 homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NKX3-1, Length 713 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-202ENST00000523261 NPRL3Q12980 569 aa11.8□□□□□ -0.52
NKX3-1-202ENST00000523261 LASP1Q14847 261 aaKnown RBP11.8□□□□□ -0.52
NKX3-1-202ENST00000523261 FAM189A2Q15884 450 aa11.8□□□□□ -0.52
NKX3-1-202ENST00000523261 ZNF385BQ569K4 471 aa11.8□□□□□ -0.52
NKX3-1-202ENST00000523261 SPDYAQ5MJ70 313 aa11.8□□□□□ -0.52
NKX3-1-202ENST00000523261 PDZK1Q5T2W1 519 aa11.8□□□□□ -0.52
NKX3-1-202ENST00000523261 SYT10Q6XYQ8 523 aa11.8□□□□□ -0.52
NKX3-1-202ENST00000523261 OR9K2Q8NGE7 335 aa11.8□□□□□ -0.52
NKX3-1-202ENST00000523261 ZFP28Q8NHY6 868 aa11.8□□□□□ -0.52
NKX3-1-202ENST00000523261 EGLN2Q96KS0 407 aa11.8□□□□□ -0.52
NKX3-1-202ENST00000523261 ZNF382Q96SR6 550 aa11.8□□□□□ -0.52
NKX3-1-202ENST00000523261 OSBPL9Q96SU4 736 aa11.8□□□□□ -0.52
NKX3-1-202ENST00000523261 NAA11Q9BSU3 229 aaPredicted RBP11.8□□□□□ -0.52
NKX3-1-202ENST00000523261 IQCGQ9H095 443 aaKnown RBP11.8□□□□□ -0.52
NKX3-1-202ENST00000523261 C1RLQ9NZP8 487 aa11.8□□□□□ -0.52
NKX3-1-202ENST00000523261 KLHL21Q9UJP4 597 aa11.8□□□□□ -0.52
NKX3-1-202ENST00000523261 SOX21Q9Y651 276 aaPredicted RBP11.8□□□□□ -0.52
NKX3-1-202ENST00000523261 KCNE3Q9Y6H6 103 aa11.8□□□□□ -0.52
NKX3-1-202ENST00000523261 TMEM229AB2RXF0 380 aa11.79□□□□□ -0.52
NKX3-1-202ENST00000523261 TRIM49D1C9J1S8 452 aa11.79□□□□□ -0.52
NKX3-1-202ENST00000523261 ANKRD28O15084 1053 aa11.79□□□□□ -0.52
NKX3-1-202ENST00000523261 SEC14L2O76054 403 aa11.79□□□□□ -0.52
NKX3-1-202ENST00000523261 NDUFA7O95182 113 aa11.79□□□□□ -0.52
NKX3-1-202ENST00000523261 GPANK1O95872 356 aa11.79□□□□□ -0.52
NKX3-1-202ENST00000523261 GLRXP35754 106 aa11.79□□□□□ -0.52
NKX3-1-202ENST00000523261 NAB1Q13506 487 aa11.79□□□□□ -0.52
NKX3-1-202ENST00000523261 SAMD5Q5TGI4 173 aa11.79□□□□□ -0.52
NKX3-1-202ENST00000523261 PAQR6Q6TCH4 344 aa11.79□□□□□ -0.52
NKX3-1-202ENST00000523261 GPRIN3Q6ZVF9 776 aa11.79□□□□□ -0.52
NKX3-1-202ENST00000523261 GLB1L3Q8NCI6 653 aaPredicted RBP11.79□□□□□ -0.52
NKX3-1-202ENST00000523261 FAM120BQ96EK7 910 aaKnown RBP11.79□□□□□ -0.52
NKX3-1-202ENST00000523261 ZNF764Q96H86 408 aaPredicted RBP11.79□□□□□ -0.52
NKX3-1-202ENST00000523261 MS4A7Q9GZW8 240 aaPredicted RBP11.79□□□□□ -0.52
NKX3-1-202ENST00000523261 VPS11Q9H270 941 aa11.79□□□□□ -0.52
NKX3-1-202ENST00000523261 MMP26Q9NRE1 261 aa11.79□□□□□ -0.52
NKX3-1-202ENST00000523261 KCNE5Q9UJ90 142 aa11.79□□□□□ -0.52
NKX3-1-202ENST00000523261 LEF1Q9UJU2 399 aaPredicted RBP11.79□□□□□ -0.52
NKX3-1-202ENST00000523261 TIMM22Q9Y584 194 aa11.79□□□□□ -0.52
NKX3-1-202ENST00000523261 AUP1Q9Y679 476 aa11.79□□□□□ -0.52
NKX3-1-202ENST00000523261 SERTM1A2A2V5 107 aa11.78□□□□□ -0.52
NKX3-1-202ENST00000523261 A8MT66 165 aa11.78□□□□□ -0.52
NKX3-1-202ENST00000523261 EIF3HO15372 352 aaKnown RBP eCLIP11.78□□□□□ -0.52
NKX3-1-202ENST00000523261 TRAF3IP2O43734 574 aaPredicted RBP11.78□□□□□ -0.52
NKX3-1-202ENST00000523261 RSL1D1O76021 490 aaKnown RBP11.78□□□□□ -0.52
NKX3-1-202ENST00000523261 UBTFL6P0CB48 400 aaPredicted RBP11.78□□□□□ -0.52
NKX3-1-202ENST00000523261 BCKDHAP12694 445 aa11.78□□□□□ -0.52
NKX3-1-202ENST00000523261 CRYBB2P43320 205 aa11.78□□□□□ -0.52
NKX3-1-202ENST00000523261 RAD52P43351 418 aa11.78□□□□□ -0.52
NKX3-1-202ENST00000523261 MTNR1AP48039 350 aa11.78□□□□□ -0.52
NKX3-1-202ENST00000523261 SELENOPP49908 381 aa11.78□□□□□ -0.52
NKX3-1-202ENST00000523261 SH3BGRP55822 239 aaPredicted RBP11.78□□□□□ -0.52
NKX3-1-202ENST00000523261 GUCY2DQ02846 1103 aa11.78□□□□□ -0.52
NKX3-1-202ENST00000523261 ZNF154Q13106 437 aa11.78□□□□□ -0.52
NKX3-1-202ENST00000523261 MMEL1Q495T6 779 aa11.78□□□□□ -0.52
NKX3-1-202ENST00000523261 C9orf139Q6ZV77 190 aa11.78□□□□□ -0.52
NKX3-1-202ENST00000523261 ZNF771Q7L3S4 317 aaPredicted RBP11.78□□□□□ -0.52
NKX3-1-202ENST00000523261 MDP1Q86V88 176 aa11.78□□□□□ -0.52
NKX3-1-202ENST00000523261 JAZF1Q86VZ6 243 aa11.78□□□□□ -0.52
NKX3-1-202ENST00000523261 KLHL7Q8IXQ5 586 aa11.78□□□□□ -0.52
NKX3-1-202ENST00000523261 FAM76AQ8TAV0 307 aa11.78□□□□□ -0.52
NKX3-1-202ENST00000523261 SF3B5Q9BWJ5 86 aaKnown RBP11.78□□□□□ -0.52
NKX3-1-202ENST00000523261 SIRT3Q9NTG7 399 aaPredicted RBP11.78□□□□□ -0.52
NKX3-1-202ENST00000523261 ZCCHC3Q9NUD5 404 aaKnown RBP11.78□□□□□ -0.52
NKX3-1-202ENST00000523261 PURGQ9UJV8 347 aaKnown RBP11.78□□□□□ -0.52
NKX3-1-202ENST00000523261 ZNF346Q9UL40 294 aaKnown RBP11.78□□□□□ -0.52
NKX3-1-202ENST00000523261 SNX24Q9Y343 169 aa11.78□□□□□ -0.52
NKX3-1-202ENST00000523261 PLXNB1O43157 2135 aa11.78□□□□□ -0.52
NKX3-1-202ENST00000523261 CENPVL1A0A0U1RR11 272 aa11.77□□□□□ -0.53
NKX3-1-202ENST00000523261 NPIPB8E9PQR5 432 aa11.77□□□□□ -0.53
NKX3-1-202ENST00000523261 CCDC188H7C350 402 aa11.77□□□□□ -0.53
NKX3-1-202ENST00000523261 HOXA3O43365 443 aaPredicted RBP11.77□□□□□ -0.53
NKX3-1-202ENST00000523261 UPK3AO75631 287 aa11.77□□□□□ -0.53
NKX3-1-202ENST00000523261 CSTAP01040 98 aa11.77□□□□□ -0.53
NKX3-1-202ENST00000523261 SBK3P0C264 359 aa11.77□□□□□ -0.53
NKX3-1-202ENST00000523261 CCNA2P20248 432 aa11.77□□□□□ -0.53
NKX3-1-202ENST00000523261 SERPINB8P50452 374 aa11.77□□□□□ -0.53
NKX3-1-202ENST00000523261 CCL8P80075 99 aa11.77□□□□□ -0.53
NKX3-1-202ENST00000523261 ARF1P84077 181 aaKnown RBP11.77□□□□□ -0.53
NKX3-1-202ENST00000523261 C11orf87Q6NUJ2 197 aa11.77□□□□□ -0.53
NKX3-1-202ENST00000523261 NOXRED1Q6NXP6 359 aa11.77□□□□□ -0.53
NKX3-1-202ENST00000523261 GRINAQ7Z429 371 aa11.77□□□□□ -0.53
NKX3-1-202ENST00000523261 TMEM99Q8N816 258 aa11.77□□□□□ -0.53
NKX3-1-202ENST00000523261 SPC24Q8NBT2 197 aa11.77□□□□□ -0.53
NKX3-1-202ENST00000523261 KTI12Q96EK9 354 aaPredicted RBP11.77□□□□□ -0.53
NKX3-1-202ENST00000523261 KCNA7Q96RP8 456 aa11.77□□□□□ -0.53
NKX3-1-202ENST00000523261 NMUR2Q9GZQ4 415 aa11.77□□□□□ -0.53
NKX3-1-202ENST00000523261 SERHL2Q9H4I8 314 aa11.77□□□□□ -0.53
NKX3-1-202ENST00000523261 PIF1Q9H611 641 aa11.77□□□□□ -0.53
NKX3-1-202ENST00000523261 FZR1Q9UM11 496 aa11.77□□□□□ -0.53
NKX3-1-202ENST00000523261 NOTCH3Q9UM47 2321 aa11.77□□□□□ -0.53
NKX3-1-202ENST00000523261 IGHV1-69-2A0A0G2JMI3 117 aa11.76□□□□□ -0.53
NKX3-1-202ENST00000523261 MDFIC2A0A1B0GVS7 189 aa11.76□□□□□ -0.53
NKX3-1-202ENST00000523261 CLDN25C9JDP6 229 aa11.76□□□□□ -0.53
NKX3-1-202ENST00000523261 FOXH1O75593 365 aa11.76□□□□□ -0.53
NKX3-1-202ENST00000523261 CLPXO76031 633 aa11.76□□□□□ -0.53
NKX3-1-202ENST00000523261 CRYBA1P05813 215 aa11.76□□□□□ -0.53
NKX3-1-202ENST00000523261 ZNF35P13682 527 aa11.76□□□□□ -0.53
NKX3-1-202ENST00000523261 EFNA1P20827 205 aaPredicted RBP11.76□□□□□ -0.53
NKX3-1-202ENST00000523261 ROR2Q01974 943 aaKnown RBP11.76□□□□□ -0.53
NKX3-1-202ENST00000523261 ZNF141Q15928 474 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms