RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.02□□□□□ -0.97
CLIP1-204ENST00000501271 NRIP3Q9NQ35 241 aa9.02□□□□□ -0.97
CLIP1-204ENST00000501271 NCDNQ9UBB6 729 aa9.02□□□□□ -0.97
CLIP1-204ENST00000501271 TRBV2A0A0J9YWF9 115 aa9.02□□□□□ -0.97
CLIP1-204ENST00000501271 PRR32B1ATL7 298 aa9.02□□□□□ -0.97
CLIP1-204ENST00000501271 IDSB3KWA1 339 aa9.02□□□□□ -0.97
CLIP1-204ENST00000501271 OIP5O43482 229 aa9.02□□□□□ -0.97
CLIP1-204ENST00000501271 OR7A10O76100 309 aa9.02□□□□□ -0.97
CLIP1-204ENST00000501271 NSA2O95478 260 aaKnown RBP9.02□□□□□ -0.97
CLIP1-204ENST00000501271 SERPINA3P01011 423 aa9.02□□□□□ -0.97
CLIP1-204ENST00000501271 C1QBP02746 253 aa9.02□□□□□ -0.97
CLIP1-204ENST00000501271 CD3GP09693 182 aa9.02□□□□□ -0.97
CLIP1-204ENST00000501271 UCHL1P09936 223 aa9.02□□□□□ -0.97
CLIP1-204ENST00000501271 EDNRAP25101 427 aa9.02□□□□□ -0.97
CLIP1-204ENST00000501271 GRPRP30550 384 aa9.02□□□□□ -0.97
CLIP1-204ENST00000501271 PSMD4P55036 377 aaKnown RBP9.02□□□□□ -0.97
CLIP1-204ENST00000501271 DGCR2P98153 550 aa9.02□□□□□ -0.97
CLIP1-204ENST00000501271 RAB30Q15771 203 aa9.02□□□□□ -0.97
CLIP1-204ENST00000501271 NTRK2Q16620 822 aa9.02□□□□□ -0.97
CLIP1-204ENST00000501271 BCL2L15Q5TBC7 163 aa9.02□□□□□ -0.97
CLIP1-204ENST00000501271 PARGQ86W56 976 aa9.02□□□□□ -0.97
CLIP1-204ENST00000501271 ZNF615Q8N8J6 731 aa9.02□□□□□ -0.97
CLIP1-204ENST00000501271 MOSPD2Q8NHP6 518 aa9.02□□□□□ -0.97
CLIP1-204ENST00000501271 AKAP1Q92667 903 aaKnown RBP eCLIP9.02□□□□□ -0.97
CLIP1-204ENST00000501271 YIPF5Q969M3 257 aa9.02□□□□□ -0.97
CLIP1-204ENST00000501271 ORAI1Q96D31 301 aa9.02□□□□□ -0.97
CLIP1-204ENST00000501271 MMABQ96EY8 250 aaPredicted RBP9.02□□□□□ -0.97
CLIP1-204ENST00000501271 HSPA12BQ96MM6 686 aa9.02□□□□□ -0.97
CLIP1-204ENST00000501271 ORAI3Q9BRQ5 295 aa9.02□□□□□ -0.97
CLIP1-204ENST00000501271 NMNAT2Q9BZQ4 307 aa9.02□□□□□ -0.97
CLIP1-204ENST00000501271 C2orf42Q9NWW7 574 aa9.02□□□□□ -0.97
CLIP1-204ENST00000501271 ING3Q9NXR8 418 aa9.02□□□□□ -0.97
CLIP1-204ENST00000501271 WSB2Q9NYS7 404 aaPredicted RBP9.02□□□□□ -0.97
CLIP1-204ENST00000501271 AK6Q9Y3D8 172 aaKnown RBP9.02□□□□□ -0.97
CLIP1-204ENST00000501271 ZNF337Q9Y3M9 751 aa9.02□□□□□ -0.97
CLIP1-204ENST00000501271 TRAV6A0A075B6T7 132 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 A0A0A6YYJ9 748 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 ANKRD34BA5PLL1 514 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 FAM171A2A8MVW0 826 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 PSMD9O00233 223 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 CLDN4O14493 209 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 ARPC3O15145 178 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 FLRT2O43155 660 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 ZNF749O43361 778 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 SRPX2O60687 465 aaPredicted RBP9.01□□□□□ -0.97
CLIP1-204ENST00000501271 CPNE3O75131 537 aaKnown RBP9.01□□□□□ -0.97
CLIP1-204ENST00000501271 IGLV3-19P01714 112 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 IFNA16P05015 189 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 CAPZBP47756 277 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 BTG1P62324 171 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 CD226Q15762 336 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 ZSWIM7Q19AV6 140 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 RPL22L1Q6P5R6 122 aaKnown RBP9.01□□□□□ -0.97
CLIP1-204ENST00000501271 FAM160A2Q8N612 972 aaPredicted RBP9.01□□□□□ -0.97
CLIP1-204ENST00000501271 HAVCR2Q8TDQ0 301 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 ZCCHC4Q9H5U6 513 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 NIPAL2Q9H841 368 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 BRD7Q9NPI1 651 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 NUDT15Q9NV35 164 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 ZNF346Q9UL40 294 aaKnown RBP9.01□□□□□ -0.97
CLIP1-204ENST00000501271 A0A087WV48 116 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 TEX13CA0A0J9YWL9 993 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 A0A1B0GVT2 93 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 PPM1BO75688 479 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 ARL6IP5O75915 188 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 UBL3O95164 117 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 SDHBP21912 280 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 GABRA4P48169 554 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 LGALS3BPQ08380 585 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 TNK1Q13470 666 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.01□□□□□ -0.97
CLIP1-204ENST00000501271 KLHL26Q53HC5 615 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.01□□□□□ -0.97
CLIP1-204ENST00000501271 LINC01590Q5TEZ4 76 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 SLITRK4Q8IW52 837 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 ZNF321PQ8N8H1 164 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 FAM71CQ8NEG0 241 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 OR6C4Q8NGE1 309 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 LGALS14Q8TCE9 139 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 RLN3Q8WXF3 142 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 ZNF524Q96C55 264 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 KLHDC7BQ96G42 594 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 ZFP3Q96NJ6 502 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 DERL3Q96Q80 235 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 RPRD1BQ9NQG5 326 aaKnown RBP9.01□□□□□ -0.97
CLIP1-204ENST00000501271 ABRACLQ9P1F3 81 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 MRPS7Q9Y2R9 242 aaKnown RBP9.01□□□□□ -0.97
CLIP1-204ENST00000501271 NUP210LQ5VU65 1888 aa9.01□□□□□ -0.97
CLIP1-204ENST00000501271 A0A1W2PPC4 97 aa9□□□□□ -0.97
CLIP1-204ENST00000501271 C2CD4DB7Z1M9 353 aa9□□□□□ -0.97
CLIP1-204ENST00000501271 PIN1P1O15428 100 aa9□□□□□ -0.97
CLIP1-204ENST00000501271 ADRB1P08588 477 aa9□□□□□ -0.97
CLIP1-204ENST00000501271 MST1P26927 711 aa9□□□□□ -0.97
CLIP1-204ENST00000501271 AQP2P41181 271 aa9□□□□□ -0.97
CLIP1-204ENST00000501271 CDKN2AP42771 156 aaKnown RBP9□□□□□ -0.97
CLIP1-204ENST00000501271 MAGEB1P43366 347 aa9□□□□□ -0.97
CLIP1-204ENST00000501271 GFERP55789 205 aa9□□□□□ -0.97
CLIP1-204ENST00000501271 NANOS3P60323 173 aaKnown RBP9□□□□□ -0.97
CLIP1-204ENST00000501271 SKP1P63208 163 aa9□□□□□ -0.97
CLIP1-204ENST00000501271 MAB21L1Q13394 359 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms