RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 SPTY2D1-AS1A0A0U1RR47 76 aa15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 RGS11O94810 467 aa15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 S1PR1P21453 382 aa15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 RABIFP47224 123 aa15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 RAB38P57729 211 aa15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 GARNL3Q5VVW2 1013 aa15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 HBMQ6B0K9 141 aa15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 NPSR1Q6W5P4 371 aa15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 OR52E2Q8NGJ4 325 aa15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 OR6K6Q8NGW6 343 aa15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 OR2T35Q8NGX2 323 aa15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 OR52N1Q8NH53 320 aa15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 LRRC20Q8TCA0 184 aa15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 SMPDL3BQ92485 455 aa15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 RIT1Q92963 219 aa15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 GTPBP2Q9BX10 602 aaKnown RBP15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 METTL17Q9H7H0 456 aaPredicted RBP15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 ISYNA1Q9NPH2 558 aa15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 CYSLTR2Q9NS75 346 aa15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 GNG8Q9UK08 70 aa15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 MMP17Q9ULZ9 603 aa15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 PRAMEF26H0Y7S4 382 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 ZMYND11Q15326 602 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 KIRREL2Q6UWL6 708 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 ZSCAN2Q7Z7L9 614 aaPredicted RBP15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 MCATQ8IVS2 390 aaKnown RBP15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 FAM98AQ8NCA5 519 aaKnown RBP15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 RCBTB1Q8NDN9 531 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 ZNRF4Q8WWF5 429 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 HYLS1Q96M11 299 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 SEC22CQ9BRL7 303 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 NDC1Q9BTX1 674 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 TWSG1Q9GZX9 223 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 KCNN2Q9H2S1 579 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 NIPAL2Q9H841 368 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 CMC2Q9NRP2 79 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 DNAJB12Q9NXW2 375 aaKnown RBP15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 ENTPD2Q9Y5L3 495 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 A0A0B4J2E0 115 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 A0A1B0GX12 115 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 FAM86C2PA6NEL3 165 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 NKX2-2O95096 273 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 ACAA2P42765 397 aaKnown RBP15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 PER3P56645 1201 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 CCINQ13939 588 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 KCNAB1Q14722 419 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 SLC36A2Q495M3 483 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 STPG1Q5TH74 334 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 GID4Q8IVV7 300 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 C19orf47Q8N9M1 422 aaKnown RBP15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 OR4C6Q8NH72 309 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 CREB3L1Q96BA8 519 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 RBM18Q96H35 190 aaKnown RBP15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 LRRC61Q9BV99 259 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 TMEM184BQ9Y519 407 aaPredicted RBP15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 THADAQ6YHU6 1953 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 MEIS3P1A6NDR6 274 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 SIGLEC5O15389 551 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 SLC19A2O60779 497 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 RCBTB2O95199 551 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 VEGFCP49767 419 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 SIGLEC14Q08ET2 396 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 ZBTB37Q5TC79 503 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 TEX261Q6UWH6 196 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 LRRC28Q86X40 367 aaPredicted RBP15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 OR4C3Q8NH37 302 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 ERMAPQ96PL5 475 aaPredicted RBP15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 DPAGT1Q9H3H5 408 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 MCCC2Q9HCC0 563 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 KLK11Q9UBX7 282 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 ERVK-19Q9WJR5 959 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 RCE1Q9Y256 329 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 U3KQ87 197 aa15.16■□□□□ 0.02
CCDC88B-210ENST00000494566 SLC22A5O76082 557 aa15.15■□□□□ 0.02
CCDC88B-210ENST00000494566 MPC2O95563 127 aa15.15■□□□□ 0.02
CCDC88B-210ENST00000494566 HLA-DQB1P01920 261 aa15.15■□□□□ 0.02
CCDC88B-210ENST00000494566 SLC35E2P0CK97 266 aa15.15■□□□□ 0.02
CCDC88B-210ENST00000494566 RAB3BP20337 219 aa15.15■□□□□ 0.02
CCDC88B-210ENST00000494566 DNASE1P24855 282 aa15.15■□□□□ 0.02
CCDC88B-210ENST00000494566 SOX2P48431 317 aa15.15■□□□□ 0.02
CCDC88B-210ENST00000494566 ZNF85Q03923 595 aa15.15■□□□□ 0.02
CCDC88B-210ENST00000494566 DNAAF1Q8NEP3 725 aa15.15■□□□□ 0.02
CCDC88B-210ENST00000494566 LGALS14Q8TCE9 139 aa15.15■□□□□ 0.02
CCDC88B-210ENST00000494566 GLTPQ9NZD2 209 aa15.15■□□□□ 0.02
CCDC88B-210ENST00000494566 POMT2Q9UKY4 750 aa15.15■□□□□ 0.02
CCDC88B-210ENST00000494566 CELSR3Q9NYQ7 3312 aa15.15■□□□□ 0.02
CCDC88B-210ENST00000494566 RIIAD1A6NNX1 92 aa15.15■□□□□ 0.02
CCDC88B-210ENST00000494566 FOXS1O43638 330 aa15.15■□□□□ 0.02
CCDC88B-210ENST00000494566 UCHL1P09936 223 aa15.15■□□□□ 0.02
CCDC88B-210ENST00000494566 LGALSLQ3ZCW2 172 aaPredicted RBP15.15■□□□□ 0.02
CCDC88B-210ENST00000494566 FAAH2Q6GMR7 532 aa15.15■□□□□ 0.02
CCDC88B-210ENST00000494566 SLC25A25Q6KCM7 469 aa15.15■□□□□ 0.02
CCDC88B-210ENST00000494566 Q6ZTK2 550 aa15.15■□□□□ 0.02
CCDC88B-210ENST00000494566 TMPRSS11FQ6ZWK6 438 aa15.15■□□□□ 0.02
CCDC88B-210ENST00000494566 CREB3L2Q70SY1 520 aa15.15■□□□□ 0.02
CCDC88B-210ENST00000494566 LUZP2Q86TE4 346 aa15.15■□□□□ 0.02
CCDC88B-210ENST00000494566 COMMD7Q86VX2 200 aa15.15■□□□□ 0.02
CCDC88B-210ENST00000494566 TOR1AIP2Q8NFQ8 470 aa15.15■□□□□ 0.02
CCDC88B-210ENST00000494566 OR2T4Q8NH00 348 aa15.15■□□□□ 0.02
CCDC88B-210ENST00000494566 DDOQ99489 341 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms