RNA–Protein interactions for RNA: ENST00000488426.5

NELFE-209, Transcript of negative elongation factor complex member E, humanhuman

TSL 5

Gene NELFE, Length 1,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFE-209ENST00000488426 ZNF524Q96C55 264 aa11.54□□□□□ -0.56
NELFE-209ENST00000488426 ZNF582Q96NG8 517 aaPredicted RBP11.54□□□□□ -0.56
NELFE-209ENST00000488426 KLHDC3Q9BQ90 382 aa11.54□□□□□ -0.56
NELFE-209ENST00000488426 FN3KQ9H479 309 aa11.54□□□□□ -0.56
NELFE-209ENST00000488426 OSGIN1Q9UJX0 560 aa11.54□□□□□ -0.56
NELFE-209ENST00000488426 WIF1Q9Y5W5 379 aa11.54□□□□□ -0.56
NELFE-209ENST00000488426 FLNBO75369 2602 aaKnown RBP11.53□□□□□ -0.56
NELFE-209ENST00000488426 TRAV27A0A087WT01 109 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 C17orf51A8MQB3 221 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 KDM4EB2RXH2 506 aaPredicted RBP11.53□□□□□ -0.56
NELFE-209ENST00000488426 ZNF701M0R085 212 aaPredicted RBP11.53□□□□□ -0.56
NELFE-209ENST00000488426 PRODHO43272 600 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 NDUFB2O95178 105 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 DBTP11182 482 aaKnown RBP11.53□□□□□ -0.56
NELFE-209ENST00000488426 PTGDSP41222 190 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 MASP1P48740 699 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 SSR4P51571 173 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 MLF1P58340 268 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 ZNF91Q05481 1191 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 ST3GAL4Q11206 333 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 FHL1Q13642 323 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 IL10RAQ13651 578 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 TBCEQ15813 527 aaPredicted RBP11.53□□□□□ -0.56
NELFE-209ENST00000488426 ANKDD1AQ495B1 522 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 THSD4Q6ZMP0 1018 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 RPS19BP1Q86WX3 136 aaKnown RBP11.53□□□□□ -0.56
NELFE-209ENST00000488426 C9orf43Q8TAL5 461 aaPredicted RBP11.53□□□□□ -0.56
NELFE-209ENST00000488426 RORBQ92753 470 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 TNFRSF13CQ96RJ3 184 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 MCCC2Q9HCC0 563 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 GALNT9Q9HCQ5 603 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 ACOT13Q9NPJ3 140 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 P4HTMQ9NXG6 502 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 PPP4R1LQ9P1A2 415 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 KCNMB2Q9Y691 235 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 PCSK5Q92824 1860 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 IRGMA1A4Y4 181 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 CCDC160A6NGH7 325 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 ZNF99A8MXY4 864 aaPredicted RBP11.53□□□□□ -0.56
NELFE-209ENST00000488426 GMFGO60234 142 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 FADS2O95864 444 aaKnown RBP11.53□□□□□ -0.56
NELFE-209ENST00000488426 CH25HO95992 272 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 SERPINA7P05543 415 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 CASP3P42574 277 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 RPS4XP62701 263 aaKnown RBP11.53□□□□□ -0.56
NELFE-209ENST00000488426 EGR4Q05215 589 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 ZNF74Q16587 644 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 H3F3CQ6NXT2 135 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 C5orf46Q6UWT4 87 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 ANKK1Q8NFD2 765 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 ZNF420Q8TAQ5 688 aaPredicted RBP11.53□□□□□ -0.56
NELFE-209ENST00000488426 RFKQ969G6 155 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 ABHD17AQ96GS6 310 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 IFT27Q9BW83 186 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 CDCA4Q9BXL8 241 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 LHPPQ9H008 270 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 CDCP1Q9H5V8 836 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 CMC2Q9NRP2 79 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 MRPS18AQ9NVS2 196 aaKnown RBP11.53□□□□□ -0.56
NELFE-209ENST00000488426 IL20RAQ9UHF4 553 aa11.53□□□□□ -0.56
NELFE-209ENST00000488426 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.53□□□□□ -0.56
NELFE-209ENST00000488426 CHCHD2Q9Y6H1 151 aaPredicted RBP11.53□□□□□ -0.56
NELFE-209ENST00000488426 MPDZO75970 2070 aa11.52□□□□□ -0.57
NELFE-209ENST00000488426 TMED7-TICAM2A0A0A6YYA0 188 aa11.52□□□□□ -0.57
NELFE-209ENST00000488426 H3BSA7 217 aa11.52□□□□□ -0.57
NELFE-209ENST00000488426 M0R3G1 203 aa11.52□□□□□ -0.57
NELFE-209ENST00000488426 ETV2O00321 342 aaPredicted RBP11.52□□□□□ -0.57
NELFE-209ENST00000488426 ATP6V1G1O75348 118 aa11.52□□□□□ -0.57
NELFE-209ENST00000488426 SLC25A12O75746 678 aa11.52□□□□□ -0.57
NELFE-209ENST00000488426 STSP08842 583 aa11.52□□□□□ -0.57
NELFE-209ENST00000488426 PRPS1P60891 318 aa11.52□□□□□ -0.57
NELFE-209ENST00000488426 IRF3Q14653 427 aa11.52□□□□□ -0.57
NELFE-209ENST00000488426 CNPY1Q3B7I2 92 aa11.52□□□□□ -0.57
NELFE-209ENST00000488426 AADACL4Q5VUY2 407 aa11.52□□□□□ -0.57
NELFE-209ENST00000488426 UBE2UQ5VVX9 321 aa11.52□□□□□ -0.57
NELFE-209ENST00000488426 ARHGAP11AQ6P4F7 1023 aa11.52□□□□□ -0.57
NELFE-209ENST00000488426 FRMD6Q96NE9 622 aa11.52□□□□□ -0.57
NELFE-209ENST00000488426 IP6K3Q96PC2 410 aa11.52□□□□□ -0.57
NELFE-209ENST00000488426 NDEL1Q9GZM8 345 aa11.52□□□□□ -0.57
NELFE-209ENST00000488426 ENKD1Q9H0I2 346 aa11.52□□□□□ -0.57
NELFE-209ENST00000488426 SLC25A18Q9H1K4 315 aa11.52□□□□□ -0.57
NELFE-209ENST00000488426 FKRPQ9H9S5 495 aa11.52□□□□□ -0.57
NELFE-209ENST00000488426 NANSQ9NR45 359 aa11.52□□□□□ -0.57
NELFE-209ENST00000488426 RSL24D1Q9UHA3 163 aaKnown RBP11.52□□□□□ -0.57
NELFE-209ENST00000488426 ZNF229Q9UJW7 825 aa11.52□□□□□ -0.57
NELFE-209ENST00000488426 GPR52Q9Y2T5 361 aa11.52□□□□□ -0.57
NELFE-209ENST00000488426 TMED7Q9Y3B3 224 aa11.52□□□□□ -0.57
NELFE-209ENST00000488426 PRRC2CQ9Y520 2896 aaKnown RBP11.52□□□□□ -0.57
NELFE-209ENST00000488426 TRAV36DV7A0A075B6V5 113 aa11.51□□□□□ -0.57
NELFE-209ENST00000488426 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.51□□□□□ -0.57
NELFE-209ENST00000488426 SUSD5O60279 629 aa11.51□□□□□ -0.57
NELFE-209ENST00000488426 PEPDP12955 493 aa11.51□□□□□ -0.57
NELFE-209ENST00000488426 PRKCAP17252 672 aa11.51□□□□□ -0.57
NELFE-209ENST00000488426 DCKP27707 260 aa11.51□□□□□ -0.57
NELFE-209ENST00000488426 C21orf33P30042 268 aaPredicted RBP11.51□□□□□ -0.57
NELFE-209ENST00000488426 MAP2K4P45985 399 aa11.51□□□□□ -0.57
NELFE-209ENST00000488426 MLLT10P55197 1068 aa11.51□□□□□ -0.57
NELFE-209ENST00000488426 GP2P55259 537 aaKnown RBP11.51□□□□□ -0.57
NELFE-209ENST00000488426 KLHL22Q53GT1 634 aa11.51□□□□□ -0.57
NELFE-209ENST00000488426 SYT6Q5T7P8 510 aaPredicted RBP11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms