RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 EXD3Q8N9H8 876 aa5.63□□□□□ -1.51
SF3B1-209ENST00000479532 MDS2Q8NDY4 140 aa5.63□□□□□ -1.51
SF3B1-209ENST00000479532 CHDHQ8NE62 594 aaPredicted RBP5.63□□□□□ -1.51
SF3B1-209ENST00000479532 OR10G3Q8NGC4 313 aa5.63□□□□□ -1.51
SF3B1-209ENST00000479532 OR4N2Q8NGD1 307 aa5.63□□□□□ -1.51
SF3B1-209ENST00000479532 PPP1R35Q8TAP8 253 aa5.63□□□□□ -1.51
SF3B1-209ENST00000479532 FAM110BQ8TC76 370 aa5.63□□□□□ -1.51
SF3B1-209ENST00000479532 PAQR8Q8TEZ7 354 aa5.63□□□□□ -1.51
SF3B1-209ENST00000479532 PMM1Q92871 262 aa5.63□□□□□ -1.51
SF3B1-209ENST00000479532 RAB8BQ92930 207 aa5.63□□□□□ -1.51
SF3B1-209ENST00000479532 C12orf43Q96C57 262 aaKnown RBP5.63□□□□□ -1.51
SF3B1-209ENST00000479532 NRBF2Q96F24 287 aa5.63□□□□□ -1.51
SF3B1-209ENST00000479532 OTUB1Q96FW1 271 aaPredicted RBP5.63□□□□□ -1.51
SF3B1-209ENST00000479532 SCMH1Q96GD3 660 aa5.63□□□□□ -1.51
SF3B1-209ENST00000479532 AURKBQ96GD4 344 aaPredicted RBP5.63□□□□□ -1.51
SF3B1-209ENST00000479532 SIGLEC12Q96PQ1 595 aa5.63□□□□□ -1.51
SF3B1-209ENST00000479532 TRNT1Q96Q11 434 aaKnown RBP5.63□□□□□ -1.51
SF3B1-209ENST00000479532 SDF2Q99470 211 aa5.63□□□□□ -1.51
SF3B1-209ENST00000479532 FAM173AQ9BQD7 235 aa5.63□□□□□ -1.51
SF3B1-209ENST00000479532 CPPED1Q9BRF8 314 aaPredicted RBP5.63□□□□□ -1.51
SF3B1-209ENST00000479532 DOHHQ9BU89 302 aa5.63□□□□□ -1.51
SF3B1-209ENST00000479532 SPATA5L1Q9BVQ7 753 aa5.63□□□□□ -1.51
SF3B1-209ENST00000479532 ARMC7Q9H6L4 198 aa5.63□□□□□ -1.51
SF3B1-209ENST00000479532 UBQLN4Q9NRR5 601 aa5.63□□□□□ -1.51
SF3B1-209ENST00000479532 B4GALT7Q9UBV7 327 aa5.63□□□□□ -1.51
SF3B1-209ENST00000479532 RIMS3Q9UJD0 308 aa5.63□□□□□ -1.51
SF3B1-209ENST00000479532 TMCC3Q9ULS5 477 aa5.63□□□□□ -1.51
SF3B1-209ENST00000479532 ANGPT4Q9Y264 503 aa5.63□□□□□ -1.51
SF3B1-209ENST00000479532 MAP1BP46821 2468 aaKnown RBP5.63□□□□□ -1.51
SF3B1-209ENST00000479532 CHD8Q9HCK8 2581 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 ANKRD11Q6UB99 2663 aaPredicted RBP5.62□□□□□ -1.51
SF3B1-209ENST00000479532 TRBV5-3A0A0A0MS03 114 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 A0A0G2JPF8 293 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 A0A1W2PQD3 144 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 HNRNPCL2B2RXH8 293 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 HNRNPCL3B7ZW38 293 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 H3BMQ9 156 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 GTPBP1O00178 669 aaKnown RBP5.62□□□□□ -1.51
SF3B1-209ENST00000479532 ICOSLGO75144 302 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 NME6O75414 186 aaPredicted RBP5.62□□□□□ -1.51
SF3B1-209ENST00000479532 PDE9AO76083 593 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 UTS2O95399 124 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 LY86O95711 162 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 ECDO95905 644 aaPredicted RBP5.62□□□□□ -1.51
SF3B1-209ENST00000479532 IFNA14P01570 189 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 NGFRP08138 427 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 HNRNPCL4P0DMR1 293 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 CCL3P10147 92 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 HOXB9P17482 250 aaPredicted RBP5.62□□□□□ -1.51
SF3B1-209ENST00000479532 GPX2P18283 190 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 CCNA2P20248 432 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 TBXA2RP21731 343 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 ELAVL4P26378 380 aaKnown RBP5.62□□□□□ -1.51
SF3B1-209ENST00000479532 PTPN6P29350 595 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 DCTP40126 519 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 CASP3P42574 277 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 CPA2P48052 419 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 MAN2A2P49641 1150 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 MEOX1P50221 254 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 ATP12AP54707 1039 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 MTPNP58546 118 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 PSME3P61289 254 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 CDK6Q00534 326 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 SCARB2Q14108 478 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 LARS2Q15031 903 aaKnown RBP5.62□□□□□ -1.51
SF3B1-209ENST00000479532 SF3B4Q15427 424 aaKnown RBP eCLIP5.62□□□□□ -1.515e-6■■■■□ 26.7
SF3B1-209ENST00000479532 GPR68Q15743 365 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 ZSWIM7Q19AV6 140 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 GRAMD1BQ3KR37 738 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 CCDC58Q4VC31 144 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 PRR31Q5SQ13 230 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 PRAMEF20Q5VT98 475 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 PRAMEF8Q5VWM4 474 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 PRAMEF7Q5VXH5 474 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 KRT80Q6KB66 452 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 HEPHL1Q6MZM0 1159 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 SLC22A16Q86VW1 577 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 LIX1LQ8IVB5 337 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 PGAM4Q8N0Y7 254 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 ZNF619Q8N2I2 560 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 FAM109AQ8N4B1 249 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 AMER2Q8N7J2 671 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 ZNF614Q8N883 585 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 C11orf65Q8NCR3 313 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 OR1J4Q8NGS1 313 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 OR10A6Q8NH74 314 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 BBS10Q8TAM1 723 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 HGDQ93099 445 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 C1GALT1C1Q96EU7 318 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 JSRP1Q96MG2 331 aaPredicted RBP5.62□□□□□ -1.51
SF3B1-209ENST00000479532 COG8Q96MW5 612 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 NODALQ96S42 347 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 ZNF607Q96SK3 696 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 THTPAQ9BU02 230 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 ZNF350Q9GZX5 532 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 TMEM38AQ9H6F2 299 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 PTGES2Q9H7Z7 377 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 MTHFD2LQ9H903 347 aaPredicted RBP5.62□□□□□ -1.51
SF3B1-209ENST00000479532 NANOGQ9H9S0 305 aa5.62□□□□□ -1.51
SF3B1-209ENST00000479532 SCPEP1Q9HB40 452 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms