RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 BMP2P12643 396 aa13.83□□□□□ -0.2
CCDC88B-205ENST00000472524 PAX1P15863 534 aa13.83□□□□□ -0.2
CCDC88B-205ENST00000472524 CDKN1AP38936 164 aa13.83□□□□□ -0.2
CCDC88B-205ENST00000472524 ZNF83P51522 516 aa13.83□□□□□ -0.2
CCDC88B-205ENST00000472524 CDH11P55287 796 aa13.83□□□□□ -0.2
CCDC88B-205ENST00000472524 PPP2R2BQ00005 443 aa13.83□□□□□ -0.2
CCDC88B-205ENST00000472524 AGKQ53H12 422 aa13.83□□□□□ -0.2
CCDC88B-205ENST00000472524 PAGE3Q5JUK9 113 aa13.83□□□□□ -0.2
CCDC88B-205ENST00000472524 GCNT6Q5T4J0 391 aa13.83□□□□□ -0.2
CCDC88B-205ENST00000472524 GPAT4Q86UL3 456 aa13.83□□□□□ -0.2
CCDC88B-205ENST00000472524 MSRB3Q8IXL7 192 aa13.83□□□□□ -0.2
CCDC88B-205ENST00000472524 PIAS4Q8N2W9 510 aaPredicted RBP13.83□□□□□ -0.2
CCDC88B-205ENST00000472524 OR9K2Q8NGE7 335 aa13.83□□□□□ -0.2
CCDC88B-205ENST00000472524 NFKBIDQ8NI38 313 aa13.83□□□□□ -0.2
CCDC88B-205ENST00000472524 GTPBP3Q969Y2 492 aaKnown RBP13.83□□□□□ -0.2
CCDC88B-205ENST00000472524 C3orf49Q96BT1 292 aa13.83□□□□□ -0.2
CCDC88B-205ENST00000472524 THOC1Q96FV9 657 aaKnown RBP13.83□□□□□ -0.2
CCDC88B-205ENST00000472524 TAPBPLQ9BX59 468 aa13.83□□□□□ -0.2
CCDC88B-205ENST00000472524 TRIM2Q9C040 744 aa13.83□□□□□ -0.2
CCDC88B-205ENST00000472524 BCL2L10Q9HD36 194 aa13.83□□□□□ -0.2
CCDC88B-205ENST00000472524 SLC7A10Q9NS82 523 aa13.83□□□□□ -0.2
CCDC88B-205ENST00000472524 INTS9Q9NV88 658 aaKnown RBP13.83□□□□□ -0.2
CCDC88B-205ENST00000472524 PARPBPQ9NWS1 579 aa13.83□□□□□ -0.2
CCDC88B-205ENST00000472524 AQP7P3A6NL99 342 aa13.82□□□□□ -0.2
CCDC88B-205ENST00000472524 SHISA9B4DS77 424 aa13.82□□□□□ -0.2
CCDC88B-205ENST00000472524 DANCRP0C864 163 aa13.82□□□□□ -0.2
CCDC88B-205ENST00000472524 ARAFP10398 606 aa13.82□□□□□ -0.2
CCDC88B-205ENST00000472524 GABRA6Q16445 453 aa13.82□□□□□ -0.2
CCDC88B-205ENST00000472524 LRIF1Q5T3J3 769 aa13.82□□□□□ -0.2
CCDC88B-205ENST00000472524 TSPO2Q5TGU0 170 aa13.82□□□□□ -0.2
CCDC88B-205ENST00000472524 C1orf140Q5VVS0 124 aa13.82□□□□□ -0.2
CCDC88B-205ENST00000472524 PRAMEF8Q5VWM4 474 aa13.82□□□□□ -0.2
CCDC88B-205ENST00000472524 PRAMEF7Q5VXH5 474 aa13.82□□□□□ -0.2
CCDC88B-205ENST00000472524 SSX8Q7RTT4 187 aa13.82□□□□□ -0.2
CCDC88B-205ENST00000472524 C10orf111Q8N326 155 aa13.82□□□□□ -0.2
CCDC88B-205ENST00000472524 ZNF385AQ96PM9 386 aaKnown RBP13.82□□□□□ -0.2
CCDC88B-205ENST00000472524 ALG2Q9H553 416 aa13.82□□□□□ -0.2
CCDC88B-205ENST00000472524 CISD1Q9NZ45 108 aaKnown RBP13.82□□□□□ -0.2
CCDC88B-205ENST00000472524 VAPAQ9P0L0 249 aa13.82□□□□□ -0.2
CCDC88B-205ENST00000472524 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.82□□□□□ -0.2
CCDC88B-205ENST00000472524 SLC25A15Q9Y619 301 aa13.82□□□□□ -0.2
CCDC88B-205ENST00000472524 FBN1P35555 2871 aaKnown RBP13.82□□□□□ -0.2
CCDC88B-205ENST00000472524 TMEM229AB2RXF0 380 aa13.81□□□□□ -0.2
CCDC88B-205ENST00000472524 M0R1B8 84 aa13.81□□□□□ -0.2
CCDC88B-205ENST00000472524 SPOCK1Q08629 439 aa13.81□□□□□ -0.2
CCDC88B-205ENST00000472524 TNK1Q13470 666 aa13.81□□□□□ -0.2
CCDC88B-205ENST00000472524 SQLEQ14534 574 aa13.81□□□□□ -0.2
CCDC88B-205ENST00000472524 PGGHGQ32M88 737 aa13.81□□□□□ -0.2
CCDC88B-205ENST00000472524 TMEM225Q6GV28 225 aa13.81□□□□□ -0.2
CCDC88B-205ENST00000472524 OR7E24Q6IFN5 339 aa13.81□□□□□ -0.2
CCDC88B-205ENST00000472524 KLHL17Q6TDP4 642 aa13.81□□□□□ -0.2
CCDC88B-205ENST00000472524 TMEM108Q6UXF1 575 aa13.81□□□□□ -0.2
CCDC88B-205ENST00000472524 AAED1Q7RTV5 226 aa13.81□□□□□ -0.2
CCDC88B-205ENST00000472524 HDXQ7Z353 690 aa13.81□□□□□ -0.2
CCDC88B-205ENST00000472524 TMEM45BQ96B21 275 aa13.81□□□□□ -0.2
CCDC88B-205ENST00000472524 TRMT61AQ96FX7 289 aaKnown RBP13.81□□□□□ -0.2
CCDC88B-205ENST00000472524 SF3B5Q9BWJ5 86 aaKnown RBP13.81□□□□□ -0.2
CCDC88B-205ENST00000472524 C1QTNF6Q9BXI9 259 aa13.81□□□□□ -0.2
CCDC88B-205ENST00000472524 RPS6KB2Q9UBS0 482 aa13.81□□□□□ -0.2
CCDC88B-205ENST00000472524 POU2F3Q9UKI9 436 aa13.81□□□□□ -0.2
CCDC88B-205ENST00000472524 PRDM4Q9UKN5 801 aa13.81□□□□□ -0.2
CCDC88B-205ENST00000472524 HIVEP2P31629 2446 aa13.81□□□□□ -0.2
CCDC88B-205ENST00000472524 HMGB1P1B2RPK0 211 aaPredicted RBP13.8□□□□□ -0.2
CCDC88B-205ENST00000472524 OVOL3O00110 214 aa13.8□□□□□ -0.2
CCDC88B-205ENST00000472524 PDLIM1O00151 329 aa13.8□□□□□ -0.2
CCDC88B-205ENST00000472524 AHSA1O95433 338 aa13.8□□□□□ -0.2
CCDC88B-205ENST00000472524 ETS2P15036 469 aa13.8□□□□□ -0.2
CCDC88B-205ENST00000472524 CDH2P19022 906 aaPredicted RBP13.8□□□□□ -0.2
CCDC88B-205ENST00000472524 PTNP21246 168 aa13.8□□□□□ -0.2
CCDC88B-205ENST00000472524 PPIBP23284 216 aaKnown RBP13.8□□□□□ -0.2
CCDC88B-205ENST00000472524 ATP4BP51164 291 aa13.8□□□□□ -0.2
CCDC88B-205ENST00000472524 CDK6Q00534 326 aa13.8□□□□□ -0.2
CCDC88B-205ENST00000472524 KRTAP1-1Q07627 177 aa13.8□□□□□ -0.2
CCDC88B-205ENST00000472524 SLC22A25Q6T423 547 aa13.8□□□□□ -0.2
CCDC88B-205ENST00000472524 ZIC4Q8N9L1 334 aa13.8□□□□□ -0.2
CCDC88B-205ENST00000472524 MAPK1IP1LQ8NDC0 245 aa13.8□□□□□ -0.2
CCDC88B-205ENST00000472524 STK35Q8TDR2 534 aa13.8□□□□□ -0.2
CCDC88B-205ENST00000472524 CKAP2Q8WWK9 683 aa13.8□□□□□ -0.2
CCDC88B-205ENST00000472524 SLC25A36Q96CQ1 311 aa13.8□□□□□ -0.2
CCDC88B-205ENST00000472524 MUS81Q96NY9 551 aa13.8□□□□□ -0.2
CCDC88B-205ENST00000472524 SLCO5A1Q9H2Y9 848 aa13.8□□□□□ -0.2
CCDC88B-205ENST00000472524 IKZF5Q9H5V7 419 aa13.8□□□□□ -0.2
CCDC88B-205ENST00000472524 SLC52A3Q9NQ40 469 aa13.8□□□□□ -0.2
CCDC88B-205ENST00000472524 DCTN4Q9UJW0 460 aa13.8□□□□□ -0.2
CCDC88B-205ENST00000472524 ABCA1O95477 2261 aa13.8□□□□□ -0.2
CCDC88B-205ENST00000472524 ARFGEF3Q5TH69 2177 aa13.79□□□□□ -0.2
CCDC88B-205ENST00000472524 TRBV5-3A0A0A0MS03 114 aa13.79□□□□□ -0.2
CCDC88B-205ENST00000472524 ELOA3DA6NLF2 546 aaPredicted RBP13.79□□□□□ -0.2
CCDC88B-205ENST00000472524 EVPLLA8MZ36 301 aa13.79□□□□□ -0.2
CCDC88B-205ENST00000472524 NPIPB7O75200 414 aa13.79□□□□□ -0.2
CCDC88B-205ENST00000472524 CD40P25942 277 aa13.79□□□□□ -0.2
CCDC88B-205ENST00000472524 GTF2E2P29084 291 aaKnown RBP13.79□□□□□ -0.2
CCDC88B-205ENST00000472524 PRKAR1BP31321 381 aa13.79□□□□□ -0.2
CCDC88B-205ENST00000472524 RPS5P46782 204 aaKnown RBP13.79□□□□□ -0.2
CCDC88B-205ENST00000472524 P2RY4P51582 365 aa13.79□□□□□ -0.2
CCDC88B-205ENST00000472524 SLC25A3Q00325 362 aa13.79□□□□□ -0.2
CCDC88B-205ENST00000472524 TGFBR3Q03167 851 aa13.79□□□□□ -0.2
CCDC88B-205ENST00000472524 SCARB2Q14108 478 aa13.79□□□□□ -0.2
CCDC88B-205ENST00000472524 VEZF1Q14119 521 aa13.79□□□□□ -0.2
CCDC88B-205ENST00000472524 CLEC12BQ2HXU8 276 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms