RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 PEX12O00623 359 aa10.77□□□□□ -0.69
CPSF3-202ENST00000460593 TO15178 435 aa10.77□□□□□ -0.69
CPSF3-202ENST00000460593 CTDSPLO15194 276 aa10.77□□□□□ -0.69
CPSF3-202ENST00000460593 SLC25A12O75746 678 aa10.77□□□□□ -0.69
CPSF3-202ENST00000460593 ARL6IP5O75915 188 aa10.77□□□□□ -0.69
CPSF3-202ENST00000460593 FBXO45P0C2W1 286 aa10.77□□□□□ -0.69
CPSF3-202ENST00000460593 PVALBP20472 110 aaPredicted RBP10.77□□□□□ -0.69
CPSF3-202ENST00000460593 GPR1P46091 355 aa10.77□□□□□ -0.69
CPSF3-202ENST00000460593 ZNF136P52737 540 aa10.77□□□□□ -0.69
CPSF3-202ENST00000460593 SIRPAP78324 504 aa10.77□□□□□ -0.69
CPSF3-202ENST00000460593 AKIRIN2Q53H80 203 aa10.77□□□□□ -0.69
CPSF3-202ENST00000460593 ELFN2Q5R3F8 820 aa10.77□□□□□ -0.69
CPSF3-202ENST00000460593 PWWP2BQ6NUJ5 590 aa10.77□□□□□ -0.69
CPSF3-202ENST00000460593 RBMS3Q6XE24 437 aaKnown RBP10.77□□□□□ -0.69
CPSF3-202ENST00000460593 FRRS1Q6ZNA5 592 aa10.77□□□□□ -0.69
CPSF3-202ENST00000460593 PARS2Q7L3T8 475 aaKnown RBP10.77□□□□□ -0.69
CPSF3-202ENST00000460593 SLC36A1Q7Z2H8 476 aa10.77□□□□□ -0.69
CPSF3-202ENST00000460593 NAXDQ8IW45 347 aa10.77□□□□□ -0.69
CPSF3-202ENST00000460593 ADAMTS15Q8TE58 950 aa10.77□□□□□ -0.69
CPSF3-202ENST00000460593 TMEM239Q8WW34 195 aa10.77□□□□□ -0.69
CPSF3-202ENST00000460593 PTDSS2Q9BVG9 487 aa10.77□□□□□ -0.69
CPSF3-202ENST00000460593 ZNF471Q9BX82 626 aaPredicted RBP10.77□□□□□ -0.69
CPSF3-202ENST00000460593 CMC2Q9NRP2 79 aa10.77□□□□□ -0.69
CPSF3-202ENST00000460593 EMC3Q9P0I2 261 aa10.77□□□□□ -0.69
CPSF3-202ENST00000460593 ZNF337Q9Y3M9 751 aa10.77□□□□□ -0.69
CPSF3-202ENST00000460593 RIIAD1A6NNX1 92 aa10.77□□□□□ -0.69
CPSF3-202ENST00000460593 MPTX1A8MV57 137 aa10.77□□□□□ -0.69
CPSF3-202ENST00000460593 PRR32B1ATL7 298 aa10.77□□□□□ -0.69
CPSF3-202ENST00000460593 GRM6O15303 877 aa10.77□□□□□ -0.69
CPSF3-202ENST00000460593 ECDO95905 644 aaPredicted RBP10.77□□□□□ -0.69
CPSF3-202ENST00000460593 SERPINA3P01011 423 aa10.77□□□□□ -0.69
CPSF3-202ENST00000460593 NFYBP25208 207 aa10.77□□□□□ -0.69
CPSF3-202ENST00000460593 NANOS3P60323 173 aaKnown RBP10.77□□□□□ -0.69
CPSF3-202ENST00000460593 POLR2GP62487 172 aaKnown RBP eCLIP10.77□□□□□ -0.69
CPSF3-202ENST00000460593 PRRT3Q5FWE3 981 aa10.77□□□□□ -0.69
CPSF3-202ENST00000460593 LIN54Q6MZP7 749 aa10.77□□□□□ -0.69
CPSF3-202ENST00000460593 LCTLQ6UWM7 567 aa10.77□□□□□ -0.69
CPSF3-202ENST00000460593 ZNF546Q86UE3 836 aa10.77□□□□□ -0.69
CPSF3-202ENST00000460593 LNX2Q8N448 690 aa10.77□□□□□ -0.69
CPSF3-202ENST00000460593 ZNF614Q8N883 585 aa10.77□□□□□ -0.69
CPSF3-202ENST00000460593 ZPLD1Q8TCW7 415 aa10.77□□□□□ -0.69
CPSF3-202ENST00000460593 MDC1Q14676 2089 aaKnown RBP10.77□□□□□ -0.69
CPSF3-202ENST00000460593 OR6C76A6NM76 312 aa10.76□□□□□ -0.69
CPSF3-202ENST00000460593 SULT1C2O00338 296 aa10.76□□□□□ -0.69
CPSF3-202ENST00000460593 MAS1P04201 325 aa10.76□□□□□ -0.69
CPSF3-202ENST00000460593 EFNB2P52799 333 aa10.76□□□□□ -0.69
CPSF3-202ENST00000460593 AP3S2P59780 193 aa10.76□□□□□ -0.69
CPSF3-202ENST00000460593 ELAVL2Q12926 359 aaKnown RBP10.76□□□□□ -0.69
CPSF3-202ENST00000460593 UNQ6126/PRO20091Q6UXV3 157 aa10.76□□□□□ -0.69
CPSF3-202ENST00000460593 USP50Q70EL3 339 aaPredicted RBP10.76□□□□□ -0.69
CPSF3-202ENST00000460593 LINC01555Q8NAE3 123 aa10.76□□□□□ -0.69
CPSF3-202ENST00000460593 OR4C6Q8NH72 309 aa10.76□□□□□ -0.69
CPSF3-202ENST00000460593 RGP1Q92546 391 aaPredicted RBP10.76□□□□□ -0.69
CPSF3-202ENST00000460593 BPIFA2Q96DR5 249 aa10.76□□□□□ -0.69
CPSF3-202ENST00000460593 S100A16Q96FQ6 103 aaKnown RBP10.76□□□□□ -0.69
CPSF3-202ENST00000460593 PAWRQ96IZ0 340 aaKnown RBP10.76□□□□□ -0.69
CPSF3-202ENST00000460593 RHBGQ9H310 441 aa10.76□□□□□ -0.69
CPSF3-202ENST00000460593 PLEKHA1Q9HB21 404 aa10.76□□□□□ -0.69
CPSF3-202ENST00000460593 MEPEQ9NQ76 525 aaPredicted RBP10.76□□□□□ -0.69
CPSF3-202ENST00000460593 ADAM18Q9Y3Q7 739 aa10.76□□□□□ -0.69
CPSF3-202ENST00000460593 IGKV1-8A0A0C4DH67 115 aa10.76□□□□□ -0.69
CPSF3-202ENST00000460593 HMSDA8MTL9 139 aa10.76□□□□□ -0.69
CPSF3-202ENST00000460593 SYT5O00445 386 aa10.76□□□□□ -0.69
CPSF3-202ENST00000460593 OR1Q1Q15612 314 aa10.76□□□□□ -0.69
CPSF3-202ENST00000460593 ZCCHC12Q6PEW1 402 aa10.76□□□□□ -0.69
CPSF3-202ENST00000460593 OR2W3Q7Z3T1 314 aa10.76□□□□□ -0.69
CPSF3-202ENST00000460593 PM20D2Q8IYS1 436 aa10.76□□□□□ -0.69
CPSF3-202ENST00000460593 OR6K6Q8NGW6 343 aa10.76□□□□□ -0.69
CPSF3-202ENST00000460593 CPNE2Q96FN4 548 aaPredicted RBP10.76□□□□□ -0.69
CPSF3-202ENST00000460593 RASL12Q9NYN1 266 aa10.76□□□□□ -0.69
CPSF3-202ENST00000460593 ZNF223Q9UK11 482 aaPredicted RBP10.76□□□□□ -0.69
CPSF3-202ENST00000460593 PCDHB10Q9UN67 800 aa10.76□□□□□ -0.69
CPSF3-202ENST00000460593 WDR45Q9Y484 360 aa10.76□□□□□ -0.69
CPSF3-202ENST00000460593 NUP210Q8TEM1 1887 aaPredicted RBP10.76□□□□□ -0.69
CPSF3-202ENST00000460593 SNRNP200O75643 2136 aaKnown RBP10.76□□□□□ -0.69
CPSF3-202ENST00000460593 LOC100509620A0A075B734 347 aa10.75□□□□□ -0.69
CPSF3-202ENST00000460593 LRIT2A6NDA9 550 aa10.75□□□□□ -0.69
CPSF3-202ENST00000460593 EIF3GO75821 320 aaKnown RBP eCLIP10.75□□□□□ -0.69
CPSF3-202ENST00000460593 SLC2A5P22732 501 aa10.75□□□□□ -0.69
CPSF3-202ENST00000460593 NDUFS1P28331 727 aa10.75□□□□□ -0.69
CPSF3-202ENST00000460593 BDKRB2P30411 391 aa10.75□□□□□ -0.69
CPSF3-202ENST00000460593 TAS2R43P59537 309 aa10.75□□□□□ -0.69
CPSF3-202ENST00000460593 SLC9A5Q14940 896 aa10.75□□□□□ -0.69
CPSF3-202ENST00000460593 TRAM1Q15629 374 aa10.75□□□□□ -0.69
CPSF3-202ENST00000460593 ZNF528Q3MIS6 628 aa10.75□□□□□ -0.69
CPSF3-202ENST00000460593 TMPRSS9Q7Z410 1059 aa10.75□□□□□ -0.69
CPSF3-202ENST00000460593 ADIPOR2Q86V24 386 aa10.75□□□□□ -0.69
CPSF3-202ENST00000460593 EIF4E3Q8N5X7 224 aaKnown RBP10.75□□□□□ -0.69
CPSF3-202ENST00000460593 ACOT4Q8N9L9 421 aa10.75□□□□□ -0.69
CPSF3-202ENST00000460593 OR7G2Q8NG99 324 aa10.75□□□□□ -0.69
CPSF3-202ENST00000460593 SIGLEC7Q9Y286 467 aa10.75□□□□□ -0.69
CPSF3-202ENST00000460593 INSL5Q9Y5Q6 135 aa10.75□□□□□ -0.69
CPSF3-202ENST00000460593 OR2T1O43869 369 aa10.75□□□□□ -0.69
CPSF3-202ENST00000460593 ABLIM3O94929 683 aa10.75□□□□□ -0.69
CPSF3-202ENST00000460593 CSN2P05814 226 aa10.75□□□□□ -0.69
CPSF3-202ENST00000460593 ADRA2CP18825 462 aa10.75□□□□□ -0.69
CPSF3-202ENST00000460593 CNR1P21554 472 aa10.75□□□□□ -0.69
CPSF3-202ENST00000460593 NPBWR1P48145 328 aa10.75□□□□□ -0.69
CPSF3-202ENST00000460593 FLT3LGP49771 235 aa10.75□□□□□ -0.69
CPSF3-202ENST00000460593 CSNK1G2P78368 415 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms