RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 HSD17B8Q92506 261 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 MBOAT4Q96T53 435 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 FZR1Q9UM11 496 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 HIF3AQ9Y2N7 669 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 RGPD2P0DJD1 1756 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 BHMG1C9JSJ3 638 aaPredicted RBP8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 HMGN2P05204 90 aaKnown RBP8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 SSTR2P30874 369 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 CDKN2DP55273 166 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 LIM2P55344 173 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 S100A10P60903 97 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 REEP5Q00765 189 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 POU4F2Q12837 409 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 ZNF468Q5VIY5 522 aaPredicted RBP8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 ARSKQ6UWY0 536 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 KRTCAP2Q8N6L1 136 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 PSMA8Q8TAA3 256 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 SMIM14Q96QK8 99 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 CNTNAP3Q9BZ76 1288 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 SEMA4CQ9C0C4 833 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 LYRM4Q9HD34 91 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 GLRX2Q9NS18 164 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 SMOXQ9NWM0 555 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 SERGEFQ9UGK8 458 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 RASD1Q9Y272 281 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 BORCS7-ASMTA0A0B4J1R7 106 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 ANGPTL7O43827 346 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 GJB3O75712 270 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 EML2O95834 649 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 TNFAIP6P98066 277 aaPredicted RBP8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 TMEM69Q5SWH9 247 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 METTL11BQ5VVY1 283 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 SSX8Q7RTT4 187 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 GALNT11Q8NCW6 608 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 SFXN5Q8TD22 340 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 BORCS7Q96B45 105 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 TMEM19Q96HH6 336 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 NODALQ96S42 347 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 CGREF1Q99674 301 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 DCTN5Q9BTE1 182 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 USP36Q9P275 1121 aaKnown RBP8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 ENPP5Q9UJA9 477 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 TRAV36DV7A0A075B6V5 113 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 IGHV5-51A0A0C4DH38 117 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 SAGE2PA6NJ88 616 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 SLC22A2O15244 555 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 SEC14L2O76054 403 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 SERPINA5P05154 406 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 ZNF728P0DKX0 622 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 COX7A1P24310 79 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 KLF3P57682 345 aaPredicted RBP8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 LSM3P62310 102 aaKnown RBP8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 ZNF704Q6ZNC4 412 aaPredicted RBP8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 RPS27LQ71UM5 84 aaKnown RBP8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 GLCCI1Q86VQ1 547 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 EMG1Q92979 244 aaKnown RBP8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 WBP2Q969T9 261 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 ZNF251Q9BRH9 671 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 SNTG1Q9NSN8 517 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 PLEKHJ1Q9NW61 149 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 MGAT4CQ9UBM8 478 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 NEUROG3Q9Y4Z2 214 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 A0A1W2PNR3 127 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 UBL3O95164 117 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 OLFM2O95897 454 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 OR8G3PP0DMU2 310 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 CD8BP10966 210 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 RAB3AP20336 220 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 PAX7P23759 505 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 EIF5AP63241 154 aaKnown RBP8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 CEBPEQ15744 281 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 HENMT1Q5T8I9 393 aaKnown RBP8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 ZNF740Q8NDX6 193 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 SCGB1C1Q8TD33 95 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 EID2BQ96D98 161 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 LRRC3Q9BY71 257 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 ZNF358Q9NW07 568 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 FBXO34Q9NWN3 711 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 COPZ2Q9P299 210 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 FOXD3Q9UJU5 478 aaPredicted RBP8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 HRH3Q9Y5N1 445 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 USP54Q70EL1 1684 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 OR14I1A6ND48 311 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 OR5H14A6NHG9 310 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 OR5H1A6NKK0 313 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 CRYZL1O95825 349 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 FUT4P22083 530 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 GNLYP22749 145 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 ACTC1P68032 377 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 ACTA1P68133 377 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 SFTPA2Q8IWL1 248 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 SFTPA1Q8IWL2 248 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 UBAC2Q8NBM4 344 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 S100ZQ8WXG8 99 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 BORCS5Q969J3 196 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 GIMAP5Q96F15 307 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 SLC17A4Q9Y2C5 497 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 ZNF337Q9Y3M9 751 aa8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 TNRC6CQ9HCJ0 1690 aaKnown RBP8.47□□□□□ -1.05
LIMCH1-202ENST00000381753 EME2A4GXA9 379 aaPredicted RBP8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms