RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 PRSS47A8MTI9 375 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 NPIPA7E9PJI5 369 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 CHRM4P08173 479 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 NPIPA8P0DM63 369 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 FOXK1P85037 733 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 EIF2S3LQ2VIR3 472 aaKnown RBP6.32□□□□□ -1.4
SF3B1-201ENST00000335508 UGT2A3Q6UWM9 527 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 GDF7Q7Z4P5 450 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 SYS1Q8N2H4 156 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 LNX2Q8N448 690 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 CPT1CQ8TCG5 803 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 COG8Q96MW5 612 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 CMC2Q9NRP2 79 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 RLIMQ9NVW2 624 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 GNG8Q9UK08 70 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 ATAD5Q96QE3 1844 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 CROCCQ5TZA2 2017 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 A0A1W2PPV9 198 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 TCRBV16S1A1N1A0A5B0 115 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 HSPB2A8KAH6 182 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 ZNF891A8MT65 544 aaPredicted RBP6.32□□□□□ -1.4
SF3B1-201ENST00000335508 ZNF182P17025 639 aaPredicted RBP6.32□□□□□ -1.4
SF3B1-201ENST00000335508 GRPRP30550 384 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 PTGER1P34995 402 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 ISL1P61371 349 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 BTG2P78543 158 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 ADARB1P78563 741 aaKnown RBP6.32□□□□□ -1.4
SF3B1-201ENST00000335508 MLLT11Q13015 90 aaPredicted RBP6.32□□□□□ -1.4
SF3B1-201ENST00000335508 HSPB2Q16082 182 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 CWF19L1Q69YN2 538 aaKnown RBP6.32□□□□□ -1.4
SF3B1-201ENST00000335508 TMPRSS11FQ6ZWK6 438 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 SLC22A16Q86VW1 577 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 FCRL1Q96LA6 429 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 ZNF681Q96N22 645 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 RNF121Q9H920 327 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 CDH20Q9HBT6 801 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 GPN1Q9HCN4 374 aaPredicted RBP6.32□□□□□ -1.4
SF3B1-201ENST00000335508 LRFN1Q9P244 771 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 ERVK-18Q9QC07 812 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 R4GN57 208 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 C7orf72A4D263 438 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 TFECO14948 347 aaPredicted RBP6.31□□□□□ -1.4
SF3B1-201ENST00000335508 PRSS23O95084 383 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 CBX5P45973 191 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 ESPL1Q14674 2120 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 TOMM34Q15785 309 aaPredicted RBP6.31□□□□□ -1.4
SF3B1-201ENST00000335508 FAM180AQ6UWF9 173 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 TPRA1Q86W33 373 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 TMEM203Q969S6 136 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 FBXO8Q9NRD0 319 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 TAS2R8Q9NYW2 309 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 COMMD9Q9P000 198 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 RAD1O60671 282 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 PIPP12273 146 aaPredicted RBP6.31□□□□□ -1.4
SF3B1-201ENST00000335508 CBLP22681 906 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 FRKP42685 505 aaPredicted RBP6.31□□□□□ -1.4
SF3B1-201ENST00000335508 ERVK-25P63136 954 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 EEF1A2Q05639 463 aaKnown RBP6.31□□□□□ -1.4
SF3B1-201ENST00000335508 RIPPLY1Q0D2K3 151 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 ISXQ2M1V0 245 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 PYDC2Q56P42 97 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 SLC23A3Q6PIS1 610 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 SFTPA1Q8IWL2 248 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 INTS12Q96CB8 462 aaKnown RBP6.31□□□□□ -1.4
SF3B1-201ENST00000335508 C7orf34Q96L11 122 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 ZFP64Q9NPA5 681 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 MEPEQ9NQ76 525 aaPredicted RBP6.31□□□□□ -1.4
SF3B1-201ENST00000335508 IL20Q9NYY1 176 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 MYOTQ9UBF9 498 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 MYOFQ9NZM1 2061 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 TNFSF15O95150 251 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 CDK1P06493 297 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 BMP4P12644 408 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 AZGP1P25311 298 aaKnown RBP6.31□□□□□ -1.4
SF3B1-201ENST00000335508 THBS2P35442 1172 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 ACVR1BP36896 505 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 RAB14P61106 215 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 GPR50Q13585 617 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 PERM1Q5SV97 790 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 MEPCEQ7L2J0 689 aaKnown RBP6.31□□□□□ -1.4
SF3B1-201ENST00000335508 HMGN2P46Q86SG4 172 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 SATL1Q86VE3 508 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 SPARTQ8N0X7 666 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 SAP25Q8TEE9 199 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 FAR1Q8WVX9 515 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 TNFRSF13CQ96RJ3 184 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 CSF3RQ99062 836 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 DIMT1Q9UNQ2 313 aaKnown RBP6.31□□□□□ -1.4
SF3B1-201ENST00000335508 TECTAO75443 2155 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 BRCA1P38398 1863 aaKnown RBP6.31□□□□□ -1.4
SF3B1-201ENST00000335508 CLDN24A6NM45 220 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 GMFGO60234 142 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 SLC43A1O75387 559 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 ZNF254O75437 659 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 SLC35A2P78381 396 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 CCL7P80098 99 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 SLC3A1Q07837 685 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 AIMP2Q13155 320 aaKnown RBP6.31□□□□□ -1.4
SF3B1-201ENST00000335508 PRAMEF20Q5VT98 475 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 NKAIN2Q5VXU1 208 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms