RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 OR2L13Q8N349 312 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 DNAAF1Q8NEP3 725 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 OR52I2Q8NH67 350 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 FAM3CQ92520 227 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 FOXN4Q96NZ1 517 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 DDOQ99489 341 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 TIMP4Q99727 224 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 UQCC2Q9BRT2 126 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 C1QTNF6Q9BXI9 259 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 SEMA4CQ9C0C4 833 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 MKKSQ9NPJ1 570 aaPredicted RBP11.64□□□□□ -0.55
LIG1-201ENST00000263274 MGAT4CQ9UBM8 478 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 CDV3Q9UKY7 258 aaKnown RBP11.64□□□□□ -0.55
LIG1-201ENST00000263274 C19orf53Q9UNZ5 99 aaPredicted RBP11.64□□□□□ -0.55
LIG1-201ENST00000263274 HEBP2Q9Y5Z4 205 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 ARID1AO14497 2285 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 CHURC1-FNTBB4DL54 471 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 MCIDASD6RGH6 385 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 H7C1C5 153 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 GPR171O14626 319 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 TFP02787 698 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 MAS1P04201 325 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 ADH7P40394 386 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 LCN6P62502 163 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 HTRA4P83105 476 aaPredicted RBP11.64□□□□□ -0.55
LIG1-201ENST00000263274 HSF2Q03933 536 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 LGALS3BPQ08380 585 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 RNF113BQ8IZP6 322 aaKnown RBP11.64□□□□□ -0.55
LIG1-201ENST00000263274 OR9A4Q8NGU2 314 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 SLC22A18Q96BI1 424 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 OR2M2Q96R28 347 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 ZNF350Q9GZX5 532 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 TSPAN10Q9H1Z9 355 aaPredicted RBP11.64□□□□□ -0.55
LIG1-201ENST00000263274 GHITMQ9H3K2 345 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 ACTR10Q9NZ32 417 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 ARPC4-TTLL3A0A0A6YYG9 625 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 TVP23AA6NH52 213 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 C4orf47A7E2U8 309 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 M0R233 179 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 GPR75O95800 540 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 BTCP35070 178 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 GPR18Q14330 331 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 ADAMTS14Q8WXS8 1223 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 ST8SIA2Q92186 375 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 GINS4Q9BRT9 223 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 FKRPQ9H9S5 495 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 TCF7L1Q9HCS4 588 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 TAS2R10Q9NYW0 307 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 FLRT3Q9NZU0 649 aa11.64□□□□□ -0.55
LIG1-201ENST00000263274 ZNF223Q9UK11 482 aaPredicted RBP11.64□□□□□ -0.55
LIG1-201ENST00000263274 COL4A3Q01955 1670 aa11.63□□□□□ -0.55
LIG1-201ENST00000263274 TDRD6O60522 2096 aaKnown RBP11.63□□□□□ -0.55
LIG1-201ENST00000263274 ZNF593O00488 134 aaPredicted RBP11.63□□□□□ -0.55
LIG1-201ENST00000263274 PRICKLE3O43900 615 aaPredicted RBP11.63□□□□□ -0.55
LIG1-201ENST00000263274 RAF1P04049 648 aa11.63□□□□□ -0.55
LIG1-201ENST00000263274 CA3P07451 260 aa11.63□□□□□ -0.55
LIG1-201ENST00000263274 OR8G3PP0DMU2 310 aa11.63□□□□□ -0.55
LIG1-201ENST00000263274 VASPP50552 380 aaPredicted RBP11.63□□□□□ -0.55
LIG1-201ENST00000263274 ACTC1P68032 377 aa11.63□□□□□ -0.55
LIG1-201ENST00000263274 ACTA1P68133 377 aa11.63□□□□□ -0.55
LIG1-201ENST00000263274 EXOSC2Q13868 293 aaKnown RBP11.63□□□□□ -0.55
LIG1-201ENST00000263274 ARHGAP11AQ6P4F7 1023 aa11.63□□□□□ -0.55
LIG1-201ENST00000263274 C11orf88Q6PI97 169 aa11.63□□□□□ -0.55
LIG1-201ENST00000263274 NXPE2Q96DL1 559 aa11.63□□□□□ -0.55
LIG1-201ENST00000263274 AHCYL2Q96HN2 611 aaKnown RBP11.63□□□□□ -0.55
LIG1-201ENST00000263274 ADAD1Q96M93 576 aaKnown RBP11.63□□□□□ -0.55
LIG1-201ENST00000263274 ZFYVE21Q9BQ24 234 aa11.63□□□□□ -0.55
LIG1-201ENST00000263274 MCCC2Q9HCC0 563 aa11.63□□□□□ -0.55
LIG1-201ENST00000263274 NDUFB2O95178 105 aa11.63□□□□□ -0.55
LIG1-201ENST00000263274 IFNA7P01567 189 aa11.63□□□□□ -0.55
LIG1-201ENST00000263274 PPP1CAP62136 330 aa11.63□□□□□ -0.55
LIG1-201ENST00000263274 BDH1Q02338 343 aa11.63□□□□□ -0.55
LIG1-201ENST00000263274 TRAM1Q15629 374 aa11.63□□□□□ -0.55
LIG1-201ENST00000263274 TMEM69Q5SWH9 247 aa11.63□□□□□ -0.55
LIG1-201ENST00000263274 RPL13AP3Q6NVV1 102 aa11.63□□□□□ -0.55
LIG1-201ENST00000263274 FGD2Q7Z6J4 655 aa11.63□□□□□ -0.55
LIG1-201ENST00000263274 CSNK1A1LQ8N752 337 aa11.63□□□□□ -0.55
LIG1-201ENST00000263274 BMPERQ8N8U9 685 aa11.63□□□□□ -0.55
LIG1-201ENST00000263274 SCMH1Q96GD3 660 aa11.63□□□□□ -0.55
LIG1-201ENST00000263274 PGLYRP3Q96LB9 341 aa11.63□□□□□ -0.55
LIG1-201ENST00000263274 OR2A5Q96R48 311 aa11.63□□□□□ -0.55
LIG1-201ENST00000263274 C20orf85Q9H1P6 137 aa11.63□□□□□ -0.55
LIG1-201ENST00000263274 ZFP64Q9NPA5 681 aa11.63□□□□□ -0.55
LIG1-201ENST00000263274 TMEM138Q9NPI0 162 aa11.63□□□□□ -0.55
LIG1-201ENST00000263274 SLC17A4Q9Y2C5 497 aa11.63□□□□□ -0.55
LIG1-201ENST00000263274 SLC22A7Q9Y694 548 aa11.63□□□□□ -0.55
LIG1-201ENST00000263274 A0A087WV48 116 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 A0A0G2JK05 382 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 A0A1B0GTH9 108 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 ADAM11O75078 769 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 CSTAP01040 98 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 HLA-DQA2P01906 255 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 F13BP05160 661 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 PROS1P07225 676 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 THBS1P07996 1170 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 HOXB2P14652 356 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 ANXA7P20073 488 aaKnown RBP11.62□□□□□ -0.55
LIG1-201ENST00000263274 SELENOPP49908 381 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 AKR1D1P51857 326 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 MAT1AQ00266 395 aaKnown RBP11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms